Swissprot
Bio::Index::Swissprot is a Perl Interface for indexing (multiple) Swissprot .dat files (ie flat file swissprot format). SYNOPSIS # Complete code for making an index for several # Swissprot files use Bio::Index::Swissprot; use strict; my $Index_File_Name = shift; my $inx =...
Platforms: *nix
License: Freeware | Size: 4.7 MB | Download (100): Bio::Index::Swissprot Download |
Bio::DB::Flat::BDB::swissprot is a swissprot adaptor for Open-bio standard BDB-indexed flat file. SYNOPSIS See Bio::DB::Flat. This module allows swissprot files to be stored in Berkeley DB flat files using the Open-Bio standard BDB-indexed flat file scheme. You should not be using this...
Platforms: *nix
License: Freeware | Size: 4.7 MB | Download (137): Bio::DB::Flat::BDB::swissprot Download |
A Perl module that provides methods for retrieving each and every field from a standard SwissProt file.
Platforms: Windows, Mac, Linux
License: Freeware | Size: 9.61 KB | Download (46): Bio::Parse::SwissProt - perl module Download |
Genom 2005 is a feature rich and user friendly application for analysing array-experiments (e.g. from provider Affymetrix). It includes normalisation of raw data, additional gene information official gene names, location, function prediction, sequences, database references (GeneOntology,...
Platforms: Windows
License: Demo | Cost: $1229.00 USD | Size: 2.3 MB | Download (142): GENOM 2005 Download |
Bio::AnnotationCollectionI is a Perl interface for annotation collections. SYNOPSIS # get an AnnotationCollectionI somehow, eg $ac = $seq->annotation(); foreach $key ( $ac->get_all_annotation_keys() ) { @values = $ac->get_Annotations($key); foreach $value ( @values ) { # value is an...
Platforms: *nix
License: Freeware | Size: 4.7 MB | Download (95): Bio::AnnotationCollectionI Download |
Bio::LiveSeq::Translation is a translation class for LiveSeq. This stores informations about aminoacids translations of transcripts. The implementation is that a Translation object is the translation of a Transcript object, with different possibilities of manipulation, different coordinate...
Platforms: *nix
License: Freeware | Size: 4.7 MB | Download (104): Bio::LiveSeq::Translation Download |
Bio::Network::IO::dip_tab is a Perl class for parsing interaction data in DIP tab-delimited format. SYNOPSIS Do not use this module directly, use Bio::Network::IO. For example: my $io = Bio::Network::IO->new(-format => dip_tab, -file => data.dip); my $network = $io->next_network; The...
Platforms: *nix
License: Freeware | Size: 99.33 KB | Download (96): Bio::Network::IO::dip_tab Download |
Bio::ExtractNE::MakeDict is a package for creating dictionary. FUNCTIONS mkdict($input_file, $output_dictfile) This function creates named-entity dictionary. Note that $input_file is a hash. Currently, only SwissProt data is supported. mkdict({ sprot_file => "sprot", } => "sprot.dict");...
Platforms: *nix
License: Freeware | Size: 5.3 MB | Download (123): Bio::ExtractNE::MakeDict Download |
The BioPHP Project is a non-profit, open source software project that aims to extend the PHP scripting language so it can be used to develop bioinformatics applications. BioPHP is NOT a bioinformatics application. Rather, it is a collection of tools to help PHP developers write bioinformatics...
Platforms: Windows, Mac, *nix, PHP, BSD Solaris
License: Freeware | Download (59): BioPHP Download |
Each TS was tested for functional enrichment using annotation obtained from numerous ontologies or curated databases (Gene Ontology, KEGG, BioCarta, Swiss-Prot, BBID, SMART, NIH Genetic Association DB, COG/KOG, TargetScan, PicTar, TFBSConserved,...).
Platforms: Mac
License: Shareware | Cost: $0.00 USD | Size: 838 B | Download (38): TranscriptomeBrowser Download |