Suffix Tree In Java

NeoBio project consists of Bioinformatics algorithms in Java. What algorithms? The current version consists mainly of (pairwise) sequence alignment algorithms such as the classical dynamic programming methods of Needleman & Wunsch (global alignment) and Smith & Waterman (local alignment)....

ogre4j project enables the use of the OGRE (Object-Oriented Graphics Rendering Engine) libraries in Java applications. The first approach was made by Ivica Aracic aka bytelord (http://www.bytelords.de). Thanks to him for taking the first steps! The last stable CVS version located at the OGRE...

RegexSR is a very easy-to-use and powerful tool (written in Java) to create and test complex regular expressions. The plugin system provides extra functionalities, such as transforming expressions into Java code, and allows the user to create his own extensions. Features include testing regular...


Platforms: Any

Jagacy VT is a feature rich VT100/VT220 terminal emulator and screen-scraping library written entirely in Java. It supports SSL, ANSI and XTERM protocols. The emulator can be configured to help create screen-scraping applications. Developers can also develop their own custom terminal emulators...


Platforms: Windows, Mac, *nix

Xj3D is a project focussed on creating a toolkit for VRML97 and X3D content written completely in Java. This toolkit may be used to the import VRML content into your custom application, or to create a fully-fledged browser. Development is financially supported through a number of institutes and...


Platforms: *nix

Columba is an Email Client written in Java, featuring a user-friendly graphical interface with wizards and internationalization support. Columba is a powerful email management tool with features to enhance your productivity and communication..


Platforms: *nix

Java-GNOME is a set of Java bindings for GNOME and GTK libraries, so GNOME applications can be written in Java. cairo-java is implemented as a JNI layer that delegates the Java calls out to the underlying C library. Installation: The simplest way to compile this package is: 1. `cd to the...


Platforms: *nix

Camel's Eye is an Open Source, client-independent, cross-platform, POP3, email filter written in Java. It is suitable for both junk deletion and general mail filtering. Compared to most clients' built-in filtering systems, Camel's Eye has several advantages: 1) Its rules are more flexible and...


Platforms: Windows, *nix

JCompanion Free is a free ASCII text editor for Windows that is written in Java. Includes syntax highlighting for Java files, an advanced Find/Replace function that allows replacement within selection. Customizable text and colors.


Platforms: Windows

Pooka is an email client written in Java, using the Javamail API. It supports email through the IMAP (connected and disconnected) and POP3 protocols. Outgoing mail is sent using SMTP. Pooka is in beta release but is very stable and has plenty of features. There are two different builds of...


Platforms: *nix

FProfiler project is a Java profiler for finding hotspots in Java libs/apps. FProfiler is a Java Profiler using BCEL and log4j. Its very fast because it inserts the needed instructions into the Bytecode of the classes. It can be used to find Hotspots in Java programs, libs, and servlet...


Platforms: *nix

Berkeley DB Java Edition is a high performance, transactional storage engine written entirely in Java. Like the highly successful Berkeley DB product, Berkeley DB Java Edition executes in the address space of the application, without the overhead of client/server communication. Berkeley DB Java...


Platforms: *nix

GCJ::Cni::Examples is a Perl module with examples of how to use GCJs CNI interface to write Perl Modules in Java. EXAMPLES Writing Treaded modules in Java One benefit of using GCJ is that it takes advantage of POSIX threading. This is nice since Perls threading model is, shall we say, less...


Platforms: *nix

Fox Hunt project is a logic game written in Java. It was inspired by the sports competition of the same name. In that competition, participants run in the forest equipped with small radio locators, seeking small hidden radio wave emitters called "foxes". In Fox Hunt you are one of such...


Platforms: *nix

Appia project is a layered communication framework implemented in Java and providing extended configuration and programming possibilities. Appia is composed by a core that is used to compose protocols and a set of protocols that provide group communication, ordering garanties, atomic broadcast,...


Platforms: *nix

JBinHex is both a library and a command-line tool, written in Java, to decode files in the Apple Macintosh BinHex 4.0 format. It accepts the following command line parameters: Either -u < url > or -f < file > to specify the source BinHexed file. If neither of those options is present,...


Platforms: *nix

Revver is an upload client in Java for the Revver site. To upload videos to Revver, you need a Revver account (create account now) and the Revver Upload Tool. After you download and double-click the Upload Tool, you can drag and drop a video to post it to your account. We accept all common...


Platforms: *nix

Tom is a software environment for defining transformations in Java. TOM programming language is an extension of Java designed to manipulate tree structures and XML documents. It is compatible with Java: a Java program is a correct Tom program. Data are represented using an efficient tree based...


Platforms: *nix

PAiN project is a new MUD code base written in Java. PAiN is a new MUD codebase written in Java. It provides a general purpose persistence engine (PAiN DB) and the ability to do dynamic code reloading..


Platforms: *nix

Giorgio's Calculator has been developed in Java, it can be used on line or downloaded to your PC. It simulates the classical electronic hand tool with memory, decimal point settings with rounding and also a “virtual paper roll” to record all data and operations you make, an important feature...


Platforms: Windows