Shadowrun Genes

DAWGPAWS is a suite of command line programs written in Perl that accelerates annotation of genes and transposable elements in plant genomes by automating the process of running annotation programs and facilitating combined evidence annotation curation. Platforms: Windows, Mac, Linux

A bot written in perl with IRC roleplaying gamers as intended audience. This bot can simulate various RPG systems in the aspect of throwing dice for certain systems. It focuses on Shadowrun and the World of Darkness, but can be used for about any RPG Platforms: Windows, Mac, Linux

QTL Reaper analyzes data from progeny of a genetic cross in experimental plants or animals. It seeks the location of genes that affect a heritable trait, and it is specially designed for analysis of gene expression measurements. Platforms: Mac, Linux

The program versusSNP is a flexible tool for mining SNPs between two close related genomes. First, we align all the orthologous genes and select SNPs, then the SNPs are separated into categories based on their mutation types. Platforms: Windows, Mac, Linux

Graphical User Interface for a software used to assess adaptive evolution in protein-coding genes. Makes use of several known bioinformatics software. IMPACT is free software, targeted to the scientific community. Platforms: Windows, Mac, Linux

Clustering is one of the most important data mining techniques used to extract useful informationfrom microarray data. Microarray data sets can be either clustered by samples or by genes. In thisresearch we focus on the gene clustering problem. The objective of gene clustering is to group genes... Platforms: Matlab

Armitage's trend test on genotype distribution of marker(s).This statistic can be used to compare genotype frequencies between affected (cases) and non-affected (controls) individuals.It is used in categorical data analysis when the aim is to assess for the presence of an association between a... Platforms: Matlab

The Synonym and Global Translator is a Gaggle Enabled Java program that enables a user to translate between different gene identifiers and find orthologous genes for a number of different species through the use of the BioNetBuilder database server. It is free to use, but is no longer actively... Platforms: Mac

Recent studies describe that the level of gene expression between species is positively correlated with the time that has passed since the species split from a common ancestor (Ranz et al., 2006). Moreover, Khaitovich et al. (2004) found a linear relationship between divergence time and... Platforms: Mac

QSB is a computational tool developed for genetical genomics, an emerging field that combines quantitative genetics and genomics. QSB takes marker genotype data and expression microarray data of a segregating population as input and identify the significant QTLs that module gene expression. DNA... Platforms: Mac

Clusterfunc is a simple and fast method for Clustering functionally divergent genes by Functional Category. Changes in protein structure and function are reflected at the level of amino acid sequence. This principle suggests that functional divergence - changes in protein function, for instance... Platforms: Mac

MCGH is a Matlab toolbox with graphical interface to analysis DNA microarray-based comparative genomic hybridization (CGH) experiments. CGH on DNA microarray enable us to measure the copy numbers of thousands of genes through the genome. M-CGH allows us to visualize the copy number changes... Platforms: Matlab

MotifCatcher is a MATLAB platform that seeks to improve upon purely de-novomotif-finding methods by systematic inclusion/exclusion of input sequences,in the search for statistically significant related subsequences (motifs).MotifCatcher works best when the user enters a large number of input... Platforms: Matlab

The Synonym and Global Translator is a Gaggle Enabled Java program that enables a user to translate between different gene identifiers and find orthologous genes for a number of different species through the use of the BioNetBuilder database server. It is free to use, but is no longer actively... Platforms: Mac

The script is a Matlab implementation of reference gene selection reported inJo Vandesompele et al, "Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes", Genome Biology 2002, 3 (7). Platforms: Matlab

QT clustering algorithm as described in:Heyer, L. J., Kruglyak, S., Yooseph, S. (1999). Exploring expression data: Identification and analysis of coexpressed genes. Genome Research 9,... Platforms: Matlab

Genes4all is a package of modules for visualizing bioinformatic information using GMOD, BioPerl and Chado. It depends on the gmod_dbsf module (http://drupal.org/project/gmod_dbsf) and is in active development. See also http://drupal.org/project/biosoftware_bench.Currently two (sub)modules are... Platforms: PHP

* Ali Baba helps you to search and visualize protein- and disease-centered information from PubMed. * Ali Baba displays the search result in form of a graph -- biological/medical objects such as proteins, diseases, or drugs are nodes; meaningful associations between them are edges. * Find out... Platforms: Mac

HaMSTR is a Hidden Markov Model based search tool to screen EST sequence data for the presence of putative orthologs to a pre-defined set of genes. A-priori knowledge about orthology-relationships among genes in different sets of reference species is extracted from the Inparanoid-Database.... Platforms: Mac

Este Service Menu para KDE4 sirve para facilitar la creaci?*N*n de comic book en formatos cbr, cbz o pdf, tambien permite el escalado y conversi?*N*n a escala de grises para usar en un ebook. Caracter?*A*sticas * Convierte directorios de im?*?Zgenes a ficheros de tipo CBR, CBZ o PDF *... Platforms: *nix