Sequence Search

A research fellow at Harvard asked me to write a program to search for gene sequence, such as d-de?TCCd-deOao, and record the next 4 codes. The data file was 14Gb. He tried some matlab codes, and the system froze, or kept running and never stopped.I first tested using a loop method (V1.0). It... Platforms: Matlab

BlastViewer provides an interactive graphical user interface for the analysis of the reports produced by the BLAST sequence database search system. BlastViewer is an easy to use software designed for everyday biological sequence analysis relying on BLAST. It allows an easy visualisation and... Platforms: Mac, Java 1.5 or later

This script allows you to quickly select the n-th rank ordered element of a given sequence. It modifies the ordering of the given sequence. Platforms: Windows, Mac, *nix, Python, BSD Solaris

Blast Viewer gives you a graphic interface to view reports produced by search systems in NCBI and EBI BLAST databases.Blast Viewer is a simple to use software designed for the daily analysis of biological sequences. It lets you view and analyze the enormous quantities of data that come from a... Platforms: Windows

ApexSQL Clean analyzes SQL Server database objects, dependencies within the database, across databases, scripts and even applications. It recognizes all database dependencies, even those not recognized by SQL Server itself. ApexSQL Clean helps you remove unwanted objects risk free, map... Platforms: Windows 7, Windows Server, Windows

Finding the last item in a loop script shows you a method to detect the last item in a loop. Platforms: Windows, Mac, *nix, Python, BSD Solaris

Maximum length sequence assuming distinctvalues = baseVal^powerVal-1 [ms]=mseqSearch(powerVal,baseVal) OUTPUT: ms: generated maximum length sequence, of length basisVal^powerVal-1 such that all values occur with equal frequency=basisVal except zero, which occurs basisVal-1 times INPUT: baseVal:... Platforms: Matlab

Short Sequence Location Mapper loads the sequences, then aligns them and finally graphs and tables can be generated for one or more datasets at the same time. SSLM typically works with a BLAST data output file of short Solexa reads mapped to RNA subjects (for example pre-miRNA sequences). The... Platforms: Windows

Permutations and combinations are often required in algorithms that do a complete search of the solution space. They are typically rather large so it's best not to compute them entirely but better to lazily generate them.This script uses Python generators to create appropriate generator objects,... Platforms: Windows, Mac, *nix, Python, BSD Solaris

The Hex Search Tool focuses on the searching capability, it allows you to find Text and Hex patterns where all or only part of the pattern is known. This can aid to find programming code where literal values are not known but the command sequence in part or whole is known: Features String... Platforms: Windows, Windows 8, Windows 7, Windows Server

AD Search&Replace will allow you to search for the files containing the line of symbols (with case sensitive or without it), specified by you, on folders tree (also support the network folders) and to replace a required line by another, specified by you. Besides you can open the found file by... Platforms: Windows

Email Spider Easy is the Professional Targeted Bulk Email Address Search and Extract Software. 1)Direct Bulk Email Marketing Tool. Invaluable to anyone who uses the internet for marketing purposes. 2)It has the powerful ability to spider and search from a starting url, search engines, trade... Platforms: Windows

Sequence diagrams are a very effective way of modeling an object oriented system. Unfortunately, most UML based modeling tools only offer primitive support for sequence diagrams. EventStudio provides advanced constructs for sequence diagram based object modeling. EventStudio supports generation... Platforms: Windows

Zoom is a package for web developers to easily add a powerful custom search engine to their website in a matter of minutes. No complicated server-side setup procedures, just index and upload. Available for PHP, ASP, JavaScript and CGI platforms. Platforms: Windows, *nix

LAN Search Pro is a free utility for fast file searching across your local network. You can search for specific file names or for specific file types (e.g. all MP3 files). LAN Search Pro provides a lightning fast search engine and includes the ability to search within hidden network resources,... Platforms: Windows, Windows 8, Windows 7, Windows Server

Search Engine Optimizer is a software for any Windows version that offers specialized checks on Web pages in an effort to achieve higher search engine rankings. Users can run their Web pages through the Search Engine Optimizer (GRSeo) program, indicating which engine they're targeting and which... Platforms: Windows

PatrolSearch is a smart search tool that greatly helps you to find information on the Internet. You type in the keywords, and PatrolSearch will: (1) Simultaneously query your keywords to those best Internet search engines. (2) Automatically check the result to tell whether the found link is... Platforms: Windows

Internet EZ search lets your computer talk to all of the major Internet search engines at once! And it&aposs designed to save you time and effort while searching the Internet and World Wide Web. You can use the built-in"categories"to search the entire Web, or just specific parts of it. Search in... Platforms: Windows

Search Accelerator 1.0 A software utility for searching the Internetin order to find something(shareware, mp3, web, game), fast.Search Accelerator provides a handy and efficient way to find iThe fastest way to search the Internet and it's FREE. No experience needed to use this meta-search... Platforms: Windows

Tiny Search Engine searhes a range of Web sites for given keywords. Unlike other searchers it doesn&apost make use of on-line search engines and so offers more up-to-date search results. Features include embedded web server, content filters and other advanced tools. Platforms: Windows