Sequence Assembly

PikLoops is a simple KDE program used to generate assembly time delays for Microchip microcontrolers using Microchip instructions. PikLoops is based on a program for Windows, originally created by William J. Boucher. Using his calculation formulas we can generate accurate assembly language time... Platforms: *nix

PM2V is a library for parallel encoding of a video sequence in MPEG II. PM2V is a project developed by students of the Ecole Nationale Supérieure dElectronique et de Radioelectronique de Bordeaux. ENSERB is a high national school of engineering based in Bordeaux (France). It has three... Platforms: *nix

Boxtream is both an audio and video encoder and streamer and an assembly of audio and video hardware, forming a mobile video streaming studio. It is designed to easily record and stream live presentations including a presenter and synchronized slides, or slides only, or presenter only, and was... Platforms: *nix

GNU lightning is a library that generates assembly language code at run-time; it is very fast, making it ideal for Just-In-Time compilers, and it abstracts over the target CPU, as it exposes to the clients a standardized RISC instruction set inspired by the MIPS and SPARC chips. GNU lightning... Platforms: *nix

Mono-Readline is a simple little assembly for .Net (specifically Mono) that provides support for GNU Readline support within Mono applications. Mono-Readline project is based on the code of Martin Baulig in the Mono debugger. I just took it and made it all nice and autoconf/automake enabled.... Platforms: *nix

Bio::AlignIO::bl2seq is a bl2seq sequence input/output stream. SYNOPSIS Do not use this module directly. Use it via the Bio::AlignIO class, as in: use Bio::AlignIO; $in = Bio::AlignIO->new(-file => "inputfilename" , -format => bl2seq); $aln = $in->next_aln(); This object can create... Platforms: *nix

Bio::AlignIO::msf is a Perl module with msf sequence input/output stream. SYNOPSIS Do not use this module directly. Use it via the Bio::AlignIO class. This object can transform Bio::Align::AlignI objects to and from msf flat file databases. The rest of the documentation details each of... Platforms: *nix

CTAL_0 is an extension of Typed Assembly Language, and an experimental C compiler that generates CTAL0 assembly code. Usage: 1. First, download the source code and extract it. 2. Next, make in ctalz-software directory. 3. The compiler can be invoked by shell script ctc. If compilation... Platforms: *nix

Bio::SeqIO::fastq is a fastq sequence input/output stream. SYNOPSIS Do not use this module directly. Use it via the Bio::SeqIO class. This object can transform Bio::Seq and Bio::Seq::SeqWithQuality objects to and from fastq flat file databases. Fastq is a file format used frequently at... Platforms: *nix

TALK is a strictly and statically typed assembly language that is flexible and powerful enough to write operating system kernels. For example, memory management (i.e. malloc/free) and multi-thread management can be implemented in TALK.. Platforms: *nix

TOS is an experimental operating system kernel which is written in our strictly and statically typed assembly language, TALK. Today, computers (PCs, cell-phones, etc.) are widely used in the world and their network become one of the indispensable social infrastructures. Therefore, the... Platforms: *nix

Algorithm::NeedlemanWunsch is a sequence alignment with configurable scoring. SYNOPSIS use Algorithm::NeedlemanWunsch; sub score_sub { if (!@_) { return -2; # gap penalty } return ($_[0] eq $_[1]) ? 1 : -1; } my $matcher = Algorithm::NeedlemanWunsch->new(&score_sub); my $score =... Platforms: *nix

biOpen is a new and unique DNA and protein sequence analysis and structure visualization software based on dynamic integration of analysis tools. This evaluation version includes the interactive multiple trace view, the Documentation window, DNA/RNA analysis tools (including Contig Assembly),... Platforms: Mac

Gene Inspector is a unique combination of a versatile electronic laboratory research notebook and a comprehensive sequence analysis product. Using GI, the user has the ability to define an entire 'suite of analyses' that can be performed each time they (or anyone in the lab) has a new sequence,... Platforms: Mac

SmoothDocs is the easiest document assembly software available. Create dynamic templates which can be quickly customized to create a limitless number of documents. Use friendly document wizards to create documents with a minimum of fuss. Ideal for individuals and small businesses. Platforms: Windows

SQLUtilities extends the T-SQL scripting environment by adding 64 new general-purpose functions for text, date/time and numeric processing that can be used directly within queries and stored procedures at the database layer. Date and time functions include table-valued sequence generator... Platforms: Windows

SeqEntropy was designed as an accessible, easy-to-use and handy assessment instrument of sequence repeats for short read sequencing. Now you can access and make use of this useful tool directly from the Command Line Interface found in your system. Platforms: Windows

ProtAnnot is a small, Java based application is a protein annotation viewer that displays protein annotations in the context of the genomic sequence. This software is a making it easy to see how alternative mRNA structures affect the various protein products encoded at a locus. for WindowsAll Platforms: Windows

Oligomer is a small, simple, Java based application specially designed to help you perform sequence analysis with standard and mixed bases. This tool will also help you find out the physical properties of the sequence, so that you get a complete bio-informatics software. for WindowsAll Platforms: Windows

UGENE is a comprehensive genome analysis suite that features multiple sequence alignment and a complex HMM builder and search module. for WindowsAll Platforms: Windows