Sequence Annotation
Artemis is a free genome browser and annotation tool that allows visualisation of sequence features, next generation data and the results of analyses within the context of the sequence, and also its six-frame translation.
Artemis is written in Java, and is available for UNIX, Macintosh and...
Platforms: Windows, Mac, Linux, Java
License: Freeware | Size: 10 MB | Download (452): Artemis Download |
Taxonnerator is a software package for carrying out simple similarity-based annotation of clustered barcode sequence data produced by jMOTU. It generates taxonomic annotation for MOTU by BLASTing representative sequences against a preformatted database of sequences from known organisms (available...
Platforms: Mac
License: Shareware | Cost: $0.00 USD | Size: 5.03 MB | Download (40): Taxonnerator Download |
GENtle is a software for DNA and amino acid editing, database management, plasmid maps, restriction and ligation, alignments, sequencer data import, calculators, gel image display, PCR, and much more.
It is free software under GPLv2+.
Requested Features:
- Import of Vector NTI...
Platforms: Mac
License: Freeware | Size: 3.7 MB | Download (602): GENtle for Mac OS X Download |
GENtle is a software for DNA and amino acid editing, database management, plasmid maps, restriction and ligation, alignments, sequencer data import, calculators, gel image display, PCR, and much more.
It is free software under GPLv2+.
Requested Features:
- Import of Vector NTI...
Platforms: Linux
License: Freeware | Size: 1.7 MB | Download (529): GENtle for Linux Download |
GENtle is a software for DNA and amino acid editing, database management, plasmid maps, restriction and ligation, alignments, sequencer data import, calculators, gel image display, PCR, and much more.
It is free software under GPLv2+.
Requested Features:
- Import of Vector NTI...
Platforms: Windows
License: Freeware | Size: 2.7 MB | Download (512): GENtle for Windows Download |
Bio::Factory::SeqAnalysisParserFactoryI is a Perl interface describing objects capable of creating SeqAnalysisParserI compliant parsers. SYNOPSIS # initialize an object implementing this interface, e.g. $factory = Bio::Factory::SeqAnalysisParserFactory->new(); # obtain a parser object...
Platforms: *nix
License: Freeware | Size: 4.7 MB | Download (97): Bio::Factory::SeqAnalysisParserFactoryI Download |
ProtAnnot is a small, Java based application is a protein annotation viewer that displays protein annotations in the context of the genomic sequence.
This software is a making it easy to see how alternative mRNA structures affect the various protein products encoded at a locus. for WindowsAll
Platforms: Windows
License: Freeware | Download (400): ProtAnnot Download |
Biological Annotation Tool is a general-purpose high speed environment for manipulating biological sequence annotations in multiple input and output formats. A plugin-style API permits much extensibility.
Platforms: Mac, BSD, Solaris, Linux
License: Freeware | Size: 3.57 MB | Download (44): Biological Annotation Tool Download |
The Annotate Sequence with GFF File makes it very easy to annotate a sequence with annotations from a GFF file (Generic Feature Format). A GFF file does not contain any sequence information, it only contains a list of annotations. You can read more about the format at...
Platforms: Mac
License: Shareware | Cost: $0.00 USD | Size: 368.64 KB | Download (38): Annotate Sequence with GFF Download |
Sequence diagrams are a very effective way of modeling an object oriented system. Unfortunately, most UML based modeling tools only offer primitive support for sequence diagrams. EventStudio provides advanced constructs for sequence diagram based object modeling. EventStudio supports generation...
Platforms: Windows
License: Shareware | Cost: $99.00 USD | Size: 3.22 MB | Download (329): EventStudio Sequence Diagram Designer Download |
Capture screen and label the screenshot with Annotation Pilot. Save your screenshot as a graphic file or send it by email. With Annotation Pilot you can: send a photo with annotations to your friends; send a software error message or a bug report to a developer; show a screenshot of your favorite...
Platforms: Windows
License: Demo | Cost: $30.00 USD | Size: 3.98 MB | Download (122): Annotation Pilot Download |
Windows modeling tool that simplifies and speeds up the creation and maintenance of UML sequence diagrams, telecom/wireless call flow diagrams and process workflow diagrams. Sequence Diagram Editor performs automatic layout/formatting (across multiple pages if necessary) and supports additional...
Platforms: Windows
License: Shareware | Cost: $99.00 USD | Size: 6.82 MB | Download (559): Sequence Diagram Editor Download |
dtRdr::Annotation::IO::YAML is a Perl module to read/write annotations from/to yml files. Methods init $io->init; items_for Return the hashrefs for a given book. @items = $io->items_for($book); insert $io->insert($object, %args); delete $io->delete($object, %args); update...
Platforms: *nix
License: Freeware | Size: 2.8 MB | Download (109): dtRdr::Annotation::IO::YAML Download |
Bio::Seq is a sequence object, with features. SYNOPSIS # This is the main sequence object in Bioperl # gets a sequence from a file $seqio = Bio::SeqIO->new( -format => embl , -file => myfile.dat); $seqobj = $seqio->next_seq(); # SeqIO can both read and write sequences; see Bio::SeqIO #...
Platforms: *nix
License: Freeware | Size: 4.7 MB | Download (98): Bio::Seq Download |
UML::Sequence is a Perl module to render UML sequence diagrams, often by running the code. SYNOPSIS use UML::Sequence; my $tree = UML::Sequence->new(@methods, @outline, &parse_method); print $tree->build_xml_sequence(Title); To use this package, or see how to use it, see genericseq.pl...
Platforms: *nix
License: Freeware | Size: 122.88 KB | Download (159): UML::Sequence Download |
UML::Sequence::JavaSeq is a Perl module for use with genericseq.pl script, works on compiled Java programs. SYNOPSIS genericseq.pl UML::Sequence::JavaSeq Hello.methods Hello > Hello.xml seq2svg.pl Hello.xml > Hello.svg OR genericseq.pl UML::Sequence::JavaSeq Hello.methods Hello |...
Platforms: *nix
License: Freeware | Size: 122.88 KB | Download (92): UML::Sequence::JavaSeq Download |
Chart::Sequence is a sequence Perl class. SYNOPSIS use Chart::Sequence; my $s = Chart::Sequence->new( Nodes => [qw( A B C )], Messages => [ [ A => B => "Message 1" ], [ B => A => "Ack 1" ], [ B => C => "Message 2" ], ], ); # or # my $s = Chart::Sequence->new( SeqMLInput =>...
Platforms: *nix
License: Freeware | Size: 15.36 KB | Download (105): Chart::Sequence Download |
Sequence Analysis project is a collage of coding projects which I have written over the past several years for various clients in my work as a bioinformatics consultant. These clients have graciously allowed me to release these works into the public domain as freeware for Macintosh OS X in...
Platforms: *nix
License: Freeware | Size: 2.3 MB | Download (122): Sequence Analysis Download |
Short Sequence Location Mapper loads the sequences, then aligns them and finally graphs and tables can be generated for one or more datasets at the same time.
SSLM typically works with a BLAST data output file of short Solexa reads mapped to RNA subjects (for example pre-miRNA sequences).
The...
Platforms: Windows
License: Freeware | Download (471): Short Sequence Location Mapper Download |
Creates an Excel spreadsheet report about the video clips, audio clips and markers you've used in your edited sequence. The report includes sheets for: Clips, Sequence Markers, Clip Markers, Clip Filters, and Reels.
Sequence Clip Reporter takes the tedious work out of creating clip usage reports...
Platforms: Mac
License: Freeware | Size: 3.6 MB | Download (479): Sequence Clip Reporter for Mac OS Download |