Refinement

Using pyramid decomposition and iterative refinement, OF is calculated. Includes a demo and a paper that thoroughly explains the methodology. Platforms: Matlab

This function "refinepatch" can refine any triangular mesh surface ( patch) with 4-split spline interpolation, see screenshot.Literature:The spline interpolation of the face edges is done by the Opposite Edge Method, described in: "Construction of Smooth Curves and Surfaces from Polyhedral... Platforms: Matlab

ShelXle is an instrument that manages to combine an editor with syntax highlighting for the SHELXL-associated .ins (input) and .res (output) files with an interactive graphical display for visualization of a three-dimensional structure including the electron density (Fo) and difference density... Platforms: Windows

NOC is a open source development toolkit and a powerful molecular explorer for protein structure visualizing,analysis,crystallographic mapping, modeling, and refinement, Gromacs/Amber MD trajectories displaying,movie making... Platforms: Windows, Mac, BSD, Linux

PARAMESH is a package of Fortran 90 subroutines designed to provide anapplication developer with an easy route to extend an existing serialcode which uses a logically cartesian structured mesh into a parallelcode with adaptive mesh refinement(AMR). Platforms: Mac, Linux

The Protein Geometry Database hosts the development code for a flexible database for searching protein geometry, as well as a library for accessing this data for protein modeling & refinement programs. Platforms: Windows, Mac, Linux

XD-shell - is a shell (console) interface to XD program which deals with experimental electron density refinement. Platforms: Windows, Mac, Linux

This script can handle multiple extrapolation steps, it can accommodate leading error terms and perform any uniform refinement scheme.The script can report a full extrapolation table, including comparing it against a previously known good solution. Key features "Richardson Extrapolation": - Able... Platforms: Windows, Mac, *nix, Matlab, BSD Solaris

3D reconstruction algorithm for electron cryo-microscopyTraditional single particle reconstruction methods use either the Fourier or the delta function basis to represent the particle density map. We propose a more flexible algorithm that adaptively chooses the basis based on the data. Because... Platforms: Matlab

Force Field X is a group of open source (GPL v. 3), platform independent (Java Runtime Environment) modules for molecular biophysics. Key methods include: Polarizable AMOEBA force fields Particle-mesh Ewald electrostatics Generalized Kirkwood continuum electrostatics X-ray and neutron... Platforms: Mac

Meshgen is a program designed to interactively generate 2D FEM meshes composed of triangular and quadrilateral elements. It supports three edge types (normal, parabolic and circle) for multiple refinement strategies and handles domains composed of more than one material. The output format is... Platforms: *nix

PyGTS is a python package used to construct, manipulate, and perform computations on 3D triangulated surfaces. It is a hand-crafted and pythonic binding for the GNU Triangulated Surface (GTS) Library. * Geometric primitives Point, Vertex, Segment, Edge, Triangle, Face, and Surface. *... Platforms: *nix

WebOb is an extraction and refinement of pieces from Paste. It is under active development. Discussion should happen on the Paste mailing lists, and bugs can go on the issue tracker. It was originally written by Ian Bicking, and the primary maintainer is now Sergey Schetinin. WebOb provides... Platforms: *nix

Volume.app is a small graphical software utility enabling quick and convenient control of a computer's audio volume level. It is intended for use on Linux/Unix systems in conjunction with an X window manager that supports dockable applications ("dockapps") such as AfterStep, BlackBox, or Window... Platforms: *nix

Software CutLogic is a 1D length nesting and cutting optimizer. It will save your material, work and time when you need to cut any linear material such as pipes, profiles, bars, cables etc. The program provides excellent stock cutting by minimizing total cost, minimizing waste, maximizing... Platforms: Windows

ArcSoft Funhouse helps you seamlessly combine two or more photos to create funny or realistic scenes. Make yourself a star quarterback or an arena rock star. Put friends and family members on $100 bills, or swap all of their heads and bodies. Funhouse walks you through adding your personal photos... Platforms: Windows

ArcSoft Panorama Maker 3 seamlessly combines horizontal, vertical, or tiled sets of images to create gorgeous panoramic photos. The program automatically processes your images, requiring little or no post-process modification. You can even create 360° panoramas. Multiple panorama options... Platforms: Windows

AlwaysUp runs your application (32/64-bit executable, batch file, shortcut, java, perl, etc.) as a Windows Service, managing and monitoring it constantly to ensure 100% uptime. It will automatically start your application whenever your computer boots, automatically restart your application if it... Platforms: Windows

Japanese wood block printing reached its zenith in the 1800's with the finest artists of the period producing elegant works of art that are unrivaled today in technique and tenor. The delicacy and refinement of the prints can be appreaciated all the more by the bold and novel presentations... Platforms: Windows

Statistics::CalinskiHarabasz is a Perl extension to the cluster stopping rule proposed by Calinski and Harabasz (C&H). SYNOPSIS use Statistics::CalinskiHarabasz; &ch(InputFile, "agglo", 10); Input file is expected in the "dense" format - Sample Input file: 6 5 1 1 0 0 1 1 0 0 0 0 1 1... Platforms: *nix