Proteins

'Proteins' is a database for protein sequences. A tool that many scientists need every day. Very often, sequences of proteins have to be looked up quickly or properties like extinction coefficients have to be calculated. 'Proteins' neatly arranges your fa Platforms: Mac

Bio::Tools::Run::TribeMCL is a method for clustering proteins into related groups, which are termed protein families. SYNOPSIS use Bio::Tools::Run::TribeMCL; use Bio::SearchIO; # 3 methods to input the blast results # straight forward raw blast output (NCBI or WU-BLAST) my @params =... Platforms: *nix

nmr-relax is designed for the study of the dynamics of proteins or other macromolecules though the analysis of NMR relaxation data. It is a community driven project created by NMR spectroscopists for NMR spectroscopists. It supports exponential curve fitting for the calculation of the R1 and R2... Platforms: *nix

MPEx is a small, easy to use application designed to help you explore the topology and other features of membrane proteins by means of hydropathy plots based upon thermodynamic and biological principles. The program is based on sliding-window analysis that represents an amino acid sequence as a... Platforms: Windows

Swiss-PdbViewer (aka DeepView) is an application that provides a user friendly interface allowing to analyze several proteins at the same time. The proteins can be superimposed in order to deduce structural alignments and compare their active sites or any other relevant parts. Amino acid... Platforms: Mac

An interactive simulation of protein folding that allows you to fold proteins of your own design. Platforms: Mac

The Biomolecule Toolkit is a library for modeling biological macromolecules such as proteins, DNA and RNA. It provides a C++ interface for common tasks in computational structural biology to facilitate and standardize the development of molecular modeling, design and analysis tools. Platforms: *nix

Program calculate food energy, proteins, carbohydrates, sugars, water, ash, lipids, MINERALS ( Calcium, Iron, Magnesium...) VITAMINS ( A, B6, B12, C, E, K, Niacin...) Program have over 6.000 items of foods Platforms: Windows

In the age of Molecular Biology and Genetic Engineering you have a chance to see and interactively analyze 3D structure of such complex Biological Macromolecules as Proteins and DNA in 3D STEREO mode on your computer, which you have just now. Using The Stereoscopic Visual Analyzer of Biological... Platforms: Windows

What does Folding@Home do? Folding@Home is a distributed computing project which studies protein folding, misfolding, aggregation, and related diseases. We use novel computational methods and large scale distributed computing to simulate timescales thousands to millions of times longer than... Platforms: Mac

Geneious Pro is an integrated, cross-platform bioinformatics software suite for manipulating, finding, sharing, and exploring biological data such as DNA sequences or proteins, phylogenies, 3D structure information, publications, etc. It features sequence alignment and phylogenetic analysis,... Platforms: Windows

Geneious Pro is an integrated, cross-platform bioinformatics software suite for manipulating, finding, sharing, and exploring biological data such as DNA sequences or proteins, phylogenies, 3D structure information, publications, etc. It features sequence alignment and phylogenetic analysis,... Platforms: Windows

TMRPres2D or TransMembrane protein Re-Presentation in 2 Dimensions for long, is a small, easy to use application designed to automate the creation of uniform, two-dimensional, high analysis graphical images/models of alpha-helical or beta-barrel transmembrane proteins. Protein sequence data and... Platforms: Windows

Geneious Pro is an integrated, cross-platform bioinformatics software suite for manipulating, finding, sharing, and exploring biological data such as DNA sequences or proteins, phylogenies, 3D structure information, publications, etc. It features sequence alignment and phylogenetic analysis,... Platforms: Windows, Mac, Linux

Toolkit to examine the topology of a phylogenetic tree, place amino acid substitutions on specific branches, polarize them and compare amino acid sequences of homologous proteins to answer a wide range of questions about protein evolution. Platforms: Windows, Mac, Linux

A rule-based modelling framework for allosteric proteins and biochemical networks. Platforms: Windows, Mac, Linux

BASILISK is a probabilistic model of the conformational space of amino acid side chains in proteins. Unlike rotamer libraries, BASILISK models the chi angles in continuous space, including the influence of the protein's backbone. Platforms: Mac, Linux

Comprehensive Meta Prediction and Annotation Services for Proteins: The new all-in-one prediction tool that can be easily extended to include any SOAP/WSDL-enabled prediction servers. A concise user interface lets you use the results instantly. Platforms: Windows, Mac, Linux

D-finder is a bioinformatic search algorithm for the identification of D-sites in JNK interacting proteins. The algorithm is a combination of pattern matching and a hidden markov model (HMM) based on a training set of known JNK D-sites. Platforms: Windows, Mac, Linux

The JPAT API is a Java API designed to provide developers with tools for calculating the results of protease digestion of proteins and ms/ms fragmentation of peptides. JPAT also contains GUI components for displaying the results. JPAT is a nice way to get Platforms: Windows, Mac, Linux