Philadelphia Chromosome

Folder Manager X is an AppleScript-based application that can be used to batch process folders, performing common repetitive tasks. Complete with an easy-to-navigate interface, this solution allows users to automatically build folders, hundreds at a time, using a specified naming convention. The...

Audio Analysis/Resynthesis the way Darwin would have done it if he were only into computer music. Using a genetic algorithm to evolve a sinusoidal/noise based sound model, create variations as the audio chromosome of a sound's family tree progresses.

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Platforms: Windows

The Gene Expression Programming Framework in Java.It separates the process of evolution from the process of interpretation of the chromosome, allowing the use of various schemes in the chromosome.


Platforms: Windows, Mac, Linux

Jenetics is a Java based object oriented library of an Genetic Algorithm. The library offers a clear separation of the several concepts of the algorithm, e.g. Gene, Chromosome, Genotype, Phenotype, Population and FitnessFunction. for WindowsAll


Platforms: Windows

This class provides methods for reading and parsing configuration files. new (ifn => 'file.cfg', opt => 'hvS:') This is a inherited method from CGI::AppBuilder. See the same method in CGI::AppBuilder for more details. get_inputs($ifn, $opt) Input variables: $ifn - input/initial file name....


Platforms: *nix

Calculates derivative log ratio spread for copy number log ratio data per chromosome and overall. This is the standard deviation of the differences between adjacent points divided by the square root of 2. Missing values are skipped. Assumes: * Samples are rows of the spreadsheet * A marker...


Platforms: Mac

The Genetic Algorithm Utility Library (or, GAUL for short) is a flexible programming library designed to aid in the development of applications that use genetic, or evolutionary, algorithms. It provides data structures and functions for handling and manipulation of the data required for serial...


Platforms: C and C plus plus

An object oriented library of an Genetic Algorithm, implemented in Java. Clear separation of the several concepts of the algorithm, e.g. Gene, Chromosome, Genotype, Phenotype, Population and Fitness Function. The fitness calculation is parallelized.


Platforms: Windows, Mac, Linux

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Platforms: Mac

GBParsy is a library of functions that parses the GenBank flatfile, which is a representative and popular sequence format. The library is optimized for speed and efficient use of memory so it can rapidly parse large sequence such as Arabidopsis chromosome for genomic analysis. GBParsyPy is...


Platforms: Mac

This script calculates thresholds for the top and bottom percentiles of log ratio data, as specified by the user, for the purpose of winsorizing * replacing extreme log ratio values with the calculated thresholds. Winsorizing data prevents segmentation algorithms from being driven by outlier...


Platforms: Mac

This toolbox implements an energy-based segmentation algorithm that usesfinite-difference based level set evolution. (See [1], [2]).Multiscale control of the curve evolution is implemented -- this greatly reducesthe sensitivity to initialization as well as improves the execution speedby factors...


Platforms: Matlab

This script creates a binary spreadsheet to indicate if there exists a rare variant in the window centered about the current marker. At chromosome edges, the maximum number of markers up to the window size is used without running into the next chromosome.


Platforms: Mac

SAMMate, a Graphical User Interface (GUI) RNA-seq analysis pipeline, allows biomedical researchers to quickly process SAM/BAM files and is compatible with both single-end and paired-end sequencing technologies. SAMMate automates some of more standard procedures in RNA-seq analysis. Features:...


Platforms: Mac

Diversity Maps is a data visualization tool for plant geneticists and breeders. It generates publication-quality, vector-based chromosome maps displaying differences in marker states between individuals. Features Displays haplotype similarity by color; Sorts accessions automatically to...


Platforms: *nix