Philadelphia Chromosome

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Calculates derivative log ratio spread for copy number log ratio data per chromosome and overall. This is the standard deviation of the differences between adjacent points divided by the square root of 2. Missing values are skipped. Assumes: * Samples are rows of the spreadsheet * A marker...

Diversity Maps was specially developed as a data visualization utility for plant geneticists and breeders. Diversity Maps is a Perl-based tool that can generate publication-quality, vector-based chromosome maps displaying differences in marker states between individuals.


Platforms: Windows, 2K, XP, Windows Vista, 7, 7x64

The Genetic Algorithm Utility Library (or, GAUL for short) is a flexible programming library designed to aid in the development of applications that use genetic, or evolutionary, algorithms. It provides data structures and functions for handling and manipulation of the data required for serial...


Platforms: C and C plus plus

GBParsy is a library of functions that parses the GenBank flatfile, which is a representative and popular sequence format. The library is optimized for speed and efficient use of memory so it can rapidly parse large sequence such as Arabidopsis chromosome for genomic analysis. GBParsyPy is...


Platforms: Mac

This script creates a binary spreadsheet to indicate if there exists a rare variant in the window centered about the current marker. At chromosome edges, the maximum number of markers up to the window size is used without running into the next chromosome.


Platforms: Mac

This script calculates thresholds for the top and bottom percentiles of log ratio data, as specified by the user, for the purpose of winsorizing * replacing extreme log ratio values with the calculated thresholds. Winsorizing data prevents segmentation algorithms from being driven by outlier...


Platforms: Mac

SAMMate, a Graphical User Interface (GUI) RNA-seq analysis pipeline, allows biomedical researchers to quickly process SAM/BAM files and is compatible with both single-end and paired-end sequencing technologies. SAMMate automates some of more standard procedures in RNA-seq analysis. Features:...


Platforms: Mac

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Platforms: Windows

JGAP (pronounced "jay-gap") is a genetic algorithms component written in the form of a Java package. JGAP project provides basic genetic mechanisms that can be easily used to apply evolutionary principles to problem solutions. The ground is laid for introducing Genetic Programming to JGAP in the...


Platforms: *nix

Evocosm is a C++ Framework for Evolutionary Computing library. Evocosm is a set of classes that abstract the fundamental components of an evolutionary algorithm. Ill list the components here with a bit of introduction; you can review the details of the classes by downloading the code archives...


Platforms: *nix

Quitter is a small, simple program that allows you to quit applications and reboot your Mac remotely, over your AppleTalk network. It comes with an easy-to-use interface that resembles the Chooser. Quitter can also quit any background applications that might be running on your computer, including...


Platforms: Mac

"Clipboard Scripts" are a group of AppleScripts designed to provide users with a quick and easy way to become more efficient in their everyday routines. By automating small tasks that users perform frequently, these scripts will help to reduce common repetition in an average user's day. This...


Platforms: Mac

Folder Manager X is an AppleScript-based application that can be used to batch process folders, performing common repetitive tasks. Complete with an easy-to-navigate interface, this solution allows users to automatically build folders, hundreds at a time, using a specified naming convention. The...


Platforms: Mac

Mail to FileMaker Importer is an AppleScript-based application that can be used to automatically import email data from Mac OS X Mail or Microsoft Entourage into a FileMaker Pro database. Within the applicationls interface, users can easily configure the database and fields to be used for...


Platforms: Mac

Display Person`s Groups is an AppleScript-based solution that can display the names of the groups assigned to selected people in Mac OS X's Address Book application. It can be triggered from Address Book's script menu in Mac OS 10.3.


Platforms: Mac

Enable | Disable Mail Accounts is an AppleScript-based solution that allows users to quickly enable or disable multiple accounts in Mac OS X's Mail application. This script can be triggered from Address Book's AppleScript menu.


Platforms: Mac

Finder Action Pack includes Automator actions for performing time saving tasks in the Finder. The following actions are included with this product: Empty trash New subfolder Quit application Wait for Finder items


Platforms: Mac

InDesign Action Pack includes Automator actions for that can be used to automate time consuming desktop publishing tasks, such as catalog production, in Adobe InDesign. The following actions are included with this product: Add Pages to InDesign Documents Export InDesign Documents to PDF Open...


Platforms: Mac

Ultimate Productivity Automator Action Pack contains A COMPLETE SET of Automated Workflows, LLC's Automator actions, for use with a variety of applications including InDesign, Photoshop, QuarkXPress, and more! The following action packs are included with this action pack, allowing you to truely...


Platforms: Mac