Nucleotide

Geneious Pro is an integrated, cross-platform bioinformatics software suite for manipulating, finding, sharing, and exploring biological data such as DNA sequences or proteins, phylogenies, 3D structure information, publications, etc. It features sequence alignment and phylogenetic analysis,... Platforms: Windows

Geneious Pro is an integrated, cross-platform bioinformatics software suite for manipulating, finding, sharing, and exploring biological data such as DNA sequences or proteins, phylogenies, 3D structure information, publications, etc. It features sequence alignment and phylogenetic analysis,... Platforms: Windows

Geneious is a useful, unique and easy-to-use software system which has been designed to greatly speed up and simplify the research in molecular biology and biochemistry. Geneious is a cross-platform research engine for the retrieval, organization and analysis of biomolecular data that allows... Platforms: Windows

Geneious is a useful, unique and easy-to-use software system which has been designed to greatly speed up and simplify the research in molecular biology and biochemistry. Geneious is a cross-platform research engine for the retrieval, organization and analysis of biomolecular data that allows... Platforms: Windows

ncRNA Mapper is a computer program that gives more insight in the localization of sequencing fragments. Given that sequencing of RNA gives reads at fixed base-positions, ncRNA Mapper analyzes the alignments (generated by Short Sequence Location Mapper; SSLM) by: visualizing them, retrieving the... Platforms: Windows

A bioinformatics program for advanced RNA sequence analysis. All analyses are fully integrated in one single, user-friendly, and intuitive software application. Some analyses are: - Secondary structure prediction - Graphical view and editing of secondary structure - Tabular view of structures... Platforms: Mac

CLC Sequence Viewer creates a software environment enabling users to make a large number of bioinformatics analyses, combined with smooth data management, and excellent graphical viewing and output options. Bioinformatics features in CLC Sequence Viewer Multiple alignment of DNA, RNA, and... Platforms: Windows

GENtle is a software for DNA and amino acid editing, database management, plasmid maps, restriction and ligation, alignments, sequencer data import, calculators, gel image display, PCR, and much more. It is free software under GPLv2+. Requested Features: - Import of Vector NTI... Platforms: Mac

GENtle is a software for DNA and amino acid editing, database management, plasmid maps, restriction and ligation, alignments, sequencer data import, calculators, gel image display, PCR, and much more. It is free software under GPLv2+. Requested Features: - Import of Vector NTI... Platforms: Linux

GENtle is a software for DNA and amino acid editing, database management, plasmid maps, restriction and ligation, alignments, sequencer data import, calculators, gel image display, PCR, and much more. It is free software under GPLv2+. Requested Features: - Import of Vector NTI... Platforms: Windows

Geneious Pro is an integrated, cross-platform bioinformatics software suite for manipulating, finding, sharing, and exploring biological data such as DNA sequences or proteins, phylogenies, 3D structure information, publications, etc. It features sequence alignment and phylogenetic analysis,... Platforms: Windows, Mac, Linux

BARNACLE is a Python library for RNA 3D structure prediction. It can be used for probabilistic sampling of RNA structures that are compatible with a given nucleotide sequence and that are RNA like on a local length scale. Platforms: Windows, Mac, BSD, Linux

dbSNPtool starts a GUI to return polymorphism data from dbSNPwww.ncbi.nih.gov/SNP Calling dbsnptool start the GUI, SNP % records are returned based on keyword. Each result is presented in a % listbox, clicking on the entry loads the sequence into the sequence %viewer. Information is presenting... Platforms: Matlab

Schwarz, Shoelson & Amphlett, Retailers Of Fine MATLAB Cloth Since 1987, proudly announce another piece of visionary software: FPAT - A Fuzzy Pattern DetectorDid you ever listen to a toddler talk?Easily your brain finds words amongst the noisy babble...Did you ever think of faulty DNA?Easily... Platforms: Matlab

bio library is a collection of algorithms and data structures that are useful when building various bioinformatics-related utilities and tools. Here are some key features of "bio library": ?*A* Sequence data type supporting protein and nucleotide sequences and conversion between them, quality... Platforms: Mac

The C++ library for bioinformatics and artificial intelligence. Basic abstractions (like attribute, domain, state, etc.), DNA primitives (Nucleotide, Chain, EnergyNucleo, SecStruct, FoldedChain, FoldedPair, Codon, CodonAminoTable, Nussinov algorithm), population genetics primitives (Allele,... Platforms: Mac

The Argo Genome Browser is the Broad Institute's production tool for visualizing and manually annotating whole genomes. This free and open source standalone Java 1.4 application provides: * Display of sequence and annotation tracks (from FASTA, Genbank, GFF, BLAST, BED, Wiggle (WIG), and... Platforms: Mac

MrAIC.pl is a Perl script for calculating AIC, AICc, BIC, and Akaike weights (for a review, see Burnham and Anderson, 2002) for nucleotide substitution models. Likelihood scores under different models are estimated using PHYML (Guindon and Gascuel, 2003). Input is DNA data in PHYML format (see... Platforms: Mac

msatcommander is a python program written to locate microsatellite (SSR, VNTR, &c) repeats within fasta-formatted sequence or consensus files. msatcommander will search for all di-, tri-, tetra-, penta-, and hexa-nucleotide repeats (with options to search for fewer repeat types and combinations... Platforms: Mac

MethMarker facilitates the design and optimization of gene-specific DNA methylation assays. Beyond its use as an epigenetic primer-design tool, it provides extensive support for epigenetic biomarker optimization. For a given gene or genomic region, MethMarker helps design DNA methylation assays... Platforms: Mac