Ncbi Sequence

Trace Modeler is an easy to use and smart editor for UML sequence diagrams... Ideal for documenting existing systems and brainstorming new designs... And fast too! It instantly updates the diagram layout, freeing you to focus on the actual content... The look of your diagrams is controlled by...

WinBlast is a handy, easy to use application specially designed to offer you a graphical front-end for NCBI BLAST.

Have you ever needed to generate easy to read Quality Reports for your DNA sequencing? Have you ever needed to sort your DNA trace files by quality? Have you ever needed to change the comments tag in your Chromatograms? If so, this software suite is for you. This bundle includes: Mac Sequence...


Platforms: Mac

Creates a software environment enabling users to make basic bioinformatics analyses and smooth data management, combined with excellent graphical viewing and output options. Some bioinformatics features are: - GenBank searching and viewing (linear and circular views) - Multiple alignment of...


Platforms: Mac

CLC Sequence Viewer creates a software environment enabling users to make a large number of bioinformatics analyses, combined with smooth data management, and excellent graphical viewing and output options. Bioinformatics features in CLC Sequence Viewer Multiple alignment of DNA, RNA, and...


Platforms: Windows

ORFer reads the NCBI GenBank XML sequence format and extracts open reading frames for proteins. Sequences can be requested by GI or accession number. ORFprimer is an extended software package for high throughput PCR primer design for biological sequences


Platforms: Windows, Mac, BSD, Solaris, Linux

POSA (Perl Objects for Sequence Analysis) provides an easy-to-use perl interface to handling raw ABI sequence trace files. For example: fasta can be extracted, sequence contigs can be build and putative SNPs and SBE primers can be easily generated.


Platforms: Windows, Mac, Linux

A fast and reliable tool, written in Java 5, for generating professional UML sequence diagrams from text. Supports actors, con-/destructors, threads, broadcasts, notes, and fragments. Can serve as a Javadoc taglet. Exports PDF, (E)PS, SVG, PNG, ...


Platforms: Windows, Mac, Linux

BlastViewer provides an interactive graphical user interface for the analysis of the reports produced by the BLAST sequence database search system. BlastViewer is an easy to use software designed for everyday biological sequence analysis relying on BLAST. It allows an easy visualisation and...


Platforms: Mac, Java 1.5 or later

Permutations and combinations are often required in algorithms that do a complete search of the solution space. They are typically rather large so it's best not to compute them entirely but better to lazily generate them.This script uses Python generators to create appropriate generator objects,...


Platforms: Windows, Mac, *nix, Python, BSD Solaris

Generators, introduced in Python 2.2, can be used to work with infinite sets. This script is a simple example of a generator that creates the Fibonacci sequence.Running this produces the following result:c:python22>python fib.py1 1 2 3 5 8 13 21 34


Platforms: Windows, Mac, *nix, Python, BSD Solaris

Maximum length sequence assuming distinctvalues = baseVal^powerVal-1 [ms]=mseqSearch(powerVal,baseVal) OUTPUT: ms: generated maximum length sequence, of length basisVal^powerVal-1 such that all values occur with equal frequency=basisVal except zero, which occurs basisVal-1 times INPUT: baseVal:...


Platforms: Matlab

There are many techniques used to deal with the problem of high PAPR in OFDM systems. An effective one is the Partial Transmit Sequence. It is simulated for QPSK modulated 64-subband OFDM system.Moreover, a .mat file of 100000 such OFDM symbols is available.


Platforms: Matlab

This routine shows the surprising behaviour of a random Fibonacci sequence.As reported by Divakar Viswanath - "RANDOM FIBONACCI SEQUENCES AND THE NUMBER 1:13198824..." - in MATHEMATICS OF COMPUTATION, 1999; 69(231): 1131-1155:"For the familiar Fibonacci sequence (defined by f1 = f2 = 1, and fn =...


Platforms: Matlab

The Kautz sequence is of the same family of sequences as the de Bruijn sequence, but has an additional requirement that it not contain any consecutive repeats of the same character.The sequence is, by nature, circular, so the final members of pairs (or triplets, quadruplets, etc...) are found...


Platforms: Matlab

This function will compute an example of an interleaved pseudo-random de Bruijn sequence, a member of the larger class of M-sequences. The sequence will contain an equal number of each character and subsequence of characters. The sequence is, by nature, circular, so the final members of pairs (or...


Platforms: Matlab

A research fellow at Harvard asked me to write a program to search for gene sequence, such as d-de?TCCd-deOao, and record the next 4 codes. The data file was 14Gb. He tried some matlab codes, and the system froze, or kept running and never stopped.I first tested using a loop method (V1.0). It...


Platforms: Matlab

Sequence Generator (file ID #24620) has been renamed to CORE - Constraint Randomization Environment. Interface and code structure of v0.91 are explained in this manual.Current development concentrates on these topics:- Performance related issues- Bug fixes (3 known issues)- Improved constraint...


Platforms: Matlab

Often I see students asking for help on a tool to compute the Fibonacci numbers. Or, I'll find them asking for help on a Project Euler problem. Or, a student has been assigned the problem of computing the fibonacci numbers using a recursive implementation. After all, these numbers lend themselves...


Platforms: Matlab

Set of 3 functions to generate a movie sequence: CamSeqUpdate, CamSeqGen, and CamSeqPlay.From a 3D scene in the current windows, the user specifies a series of views by moving the camera with the camera toolbox (CamSeqUpdate). The list of views are then used to generate a continuous sequence by...


Platforms: Matlab