Molecule

ChemDoodle is a fully functional chemical drawing application that works on every operating system! In addition to being multiplatform, ChemDoodle also natively reads and writes many common file formats including ChemDraw's CDX and CDXML. You can write ChemDraw files for submitting journal... Platforms: Mac

Solubility provides a GUI allowing users to develop regression models to predict the aqueous solubility of a molecule. Users can choose or create descriptors and/or atomic typing parameters, train the model, and apply it to large databases. 100% Java. Platforms: Windows, Mac, Linux

How well can you visualize the 3D structure of the DNA molecule? Can you spot erroneous depictions of DNA as a left-handed double helix? If you're not satisfied with your level of understanding of DNA structure or would like to have at your fingertips an instant memory refresher for which... Platforms: Mac

FlatMol a molecule drawing tool for the educator or student Simple and flat, chemical structures made with this program are designed to be compatible with a paper surface rather than to compete with 3D models. Tips: Platforms: Mac

Gabedit is a Graphical User Interface to Gamess-US, Gaussian, Molcas, Molpro, MPQC and Q-Chem computational chemistry packages.Gabedit includes graphical facilities for generating keywords and options, molecule specifications and their input sections for even the most advanced calculation... Platforms: *nix, C/C++, BSD

Hidden Markov models are used to describe the "stepping" behavior of molecular motors, as measured by single-molecule fluorescence techniques. Our HMM implementation is more versatile than the one described by Milescu, et al. Biophys. J. 91:3135-3150 and can be used as a "blind" step detector or... Platforms: Matlab

The file drawpdb.m is about 40 lines of code that makes a simple compact viewer of small molecules. A number of .pdb files are also included. Platforms: Matlab

PDBRead is a function that will read a Protein Data Bank file into a MATLAB structure.PDB_struct = PDBRead(filename) reads the file corresponding to filename and stores the information contained in this file in the PDB_struct. e.g. PDB_struct = PDBRead('PDBSilk.txt')The file that is being read by... Platforms: Matlab

SMIProm: Single Molecule Image Processing Program.I use this program to get intensity profiles of single molecule images and fit it using the curve fitting toolbox.basically you can use the program to:-->Select an ROI from an image-->Find the intensity profile along a line in the image--> Fit the... Platforms: Matlab

Dragon CurveGosper Flowsnake CurveHexagon Molecule CurveHilbert CurveKoch Snowflake CurveSierpinski Arrowhead CurveSierpinski Cross CurveSierpinski Triangle Curve Platforms: Matlab

In the web marketing/publishing industry a content molecule is basically a piece of reusable content that can be placed throughout a website. Typically isolated in nature, they often appear in sidebars and margins. Applying this concept to the WordPress framework, you can create content that can... Platforms: PHP

Starting from atoms, see how many molecules you can build. Collect your molecules and see them in 3D! Platforms: Mac

Calculates Natural Product(NP)-likeness of a molecule, i.e. the similarity of the molecule to the structure space covered by known natural products. NP-likeness is a useful criterion to screen compound libraries and to design new lead compounds. Features + Check for redundant structures in... Platforms: Mac

The Mass Spectrometry Laboratory is a multidisciplinary laboratory, given the versatility of mass spectrometric techniques. The objective of the Mass Spectrometry Laboratory is to contribute to the development of new fundamental concepts and to enlighten their applications in the fields of... Platforms: Mac

ChemAzTech is an OpenSource (GPL licence) Web chemistry software connected to a MySQL database (L.A.M.P. software) which is storing molecules. You can manage a chemical laboratory database, with product's properties. Features MyChem + JChemPaint applet allow to the user to search by... Platforms: *nix

Avogadro is an advanced molecule editor and visualizer designed for cross-platform use in computational chemistry, molecular modeling, bioinformatics, materials science, and related areas. It offers flexible high quality rendering and a powerful plugin architecture. Cross-Platform: Molecular... Platforms: *nix

The Xtal System is a comprehensive suite of small molecule structural solution, refinement and analysis software, supporting both X-ray, neutron and electron diffraction data. It runs on both Unix and MS Win32 platforms and uses tcl/tk graphics. Platforms: *nix

The brand new AbszOrb 3.0 is a game, it's a program, it's a screensaver - it's three mints in one. The new version of AbszOrb has been completely revamped. You can now texture orbs, arrange them in your universe, and fly freely throughout the whole universe or particle system. The new version...

This screensaver shows real 3D models of biological molecules rotating. Your screen will look like screens of computers in science fiction films! Six molecules are available in the current version: four prototypes of DNA (Deoxyribonucleis Acid - storage of genetics information) and two proteins -... Platforms: Windows

Inside the Cell 3D screensaver will provide you with a unique opportunity to plunge into the very depths of the living organism. You will be able to explore the mysteries of life in the micro-world and see what goes on inside living cells. It is really something worth looking at, especially when... Platforms: Windows