Molecular Vibrations

An award-winning Mac program for building, displaying and manipulating all kinds of crystal and molecular structures - with real-time photo-realistic graphics and 'out-of-the-screen' 3D display. CrystalMaker allows visualization of massive structures, with fast bond and polyhedra generation and...

Get vast information regarding all the elements of the modern Periodic Table. Download this one and you’ll never find yourself short of information about the elements that make this universe. This Periodic Table contains the following information about the 116 elements known to man. * Name *...

A database to handle voucher specimens of DNA sequences used for molecular phylogenetics.


Platforms: Windows, Mac, Linux

A Molecular Biology software that provides tools with an intuitive interface to assists you in DNA cloning, sequence analysis and visualization. Serial Cloner 2.1 handles Features/Annotations and now allows to define, import and export, customized lists of Features. User can annotate any sequence...


Platforms: Mac

Although a large number of tools for the three-dimensional visualization of molecular structures exists, it often proved convenient to tailor a visualization tool specifically for a certain purpose. In BALL, we chose two complementary approaches. First, we wanted to give the user the full...


Platforms: Mac

A minimalistic tool for molecular phylogenetics able to recover phylogenies from nucleotide sequences. PhyloCoco uses the likelihood or the minimum evolution criterion, and automatically selects the best substitution model of DNA evolution for the dataset analyzed.PhyloCoco key-features are: -...


Platforms: Mac

gOpenMol is a tool for the visualization and analysis of molecular structures and their chemical properties. The program uses Tcl/Tk scripting engine and can thus be easily extended without modifying the kernel code. gOpenMol can also be extended by writing extensions using sharable objects...


Platforms: *nix

CDL provides a generic C++ framework to write algorithms for the calculation of molecular descriptors. CDL provides efficient substructure search, fingerprints and pharmacophore algorithms, and many more for the calculation molecular descriptors.


Platforms: Windows, Mac, Linux

Explore the genetic building blocks of Ableton’s Live software in this deep, 22-video, molecular explanation of Live’s essential performance ingredients... Just as real DNA is made up of genes, Live’s genetic materials are the collection of advanced


Platforms: Mac

Molsketch is a 2D molecular editing tool. Its goal is to help you draw molecules quick and easily. Of course you're creation can be exported afterwards in high quality in a number of vector and bitmap formats.


Platforms: *nix

Hidden Markov models are used to describe the "stepping" behavior of molecular motors, as measured by single-molecule fluorescence techniques. Our HMM implementation is more versatile than the one described by Milescu, et al. Biophys. J. 91:3135-3150 and can be used as a "blind" step detector or...


Platforms: Matlab

NOC is a open source development toolkit and a powerful molecular explorer for protein structure visualizing,analysis,crystallographic mapping, modeling, and refinement, Gromacs/Amber MD trajectories displaying,movie making...


Platforms: Windows, Mac, BSD, Linux

The Mole Package contains 3 mfiles and 1 matfile. molecules2 calculates molecular masses pertable provides data on the elements sym2an converts a chemical symbol to a valid atomic number (useful for molecules2 and pertable). atoms contains atomic number data.


Platforms: Matlab

This function allows calculating the compressibility factor, the coefficient of fugacity and density of a pure compound using the Soave-Benedict-Webb-Rubin equation of state (SBWR-EOS).The next data are necessary: temperature, pressure, molecular weight, acentric factor, and critical properties...


Platforms: Matlab

This Program is the implementation of the paper"An Improved Hybrid Model for Molecular Image Denoising"Original Paper can be downloaded from : www.springerlink.com/index/g31k52277220rvu8.pdfCopies of the paper available...


Platforms: Matlab

A Java based molecular modeling program. Has support for generating movies by interpolating between given positions, interactive display and manipulation of atoms and bonds, and dynamic modeling of substance formation.


Platforms: Windows, Mac, Linux

A 3D viewer for molecular charge distributions.Implemented in OpenGL with GLUT.Includes a small OpenGL windowing library/widget set.


Platforms: Windows, Mac, BSD, Linux

CQZ2 Magic Worksheet Generator for Chemistry for Windows has a powerful Wizard to help you Create your own custom Worksheets - Units and chemical formulae - Gases - Aqueous solutions: - Colligative properties of solutions - Stoichiometry of chemical reactions: - Percent yield of reaction -...


Platforms: Windows, Windows 7

ORMA (Oligonucleotide Retrieving for Molecular Applications) is a series of integrated scripts in Matlab, which performs an accurate search of all the positions able to specifically discriminate one species among homologous ones. ORMA also performs an accurate selection of high-quality...


Platforms: Matlab

PFMD performs a Molecular Dynamics simulation of some polarizable fluids at the liquid state by means of a dissociable potential. Supported molecules are H2O (water) and MX3, where M is a metal among Al, Fe, or Ga and X is a halogen among Cl, Br, or I.


Platforms: Windows, Mac, Linux