Molecular Modeling

The Java Modeling Language (JML) is a behavioral interface specification language that can be used to specify the behavior of Java modules. It combines the design by contract approach of Eiffel and the model-based specification approach of the Larch family of interface specification languages,... Platforms: Windows, Mac, *nix, Java, BSD Solaris

Hidden Markov models are used to describe the "stepping" behavior of molecular motors, as measured by single-molecule fluorescence techniques. Our HMM implementation is more versatile than the one described by Milescu, et al. Biophys. J. 91:3135-3150 and can be used as a "blind" step detector or... Platforms: Matlab

This ZIP-file contains the demonstration files used during the "Analog and Mixed-Signal Circuit Modeling with Simulink Product Family" webinar presented on June 22, 2004. Platforms: Matlab

Companion Software for the Dynamic Modeling and Control of Engineering Systems, 2e book by J. Lowen Shearer, Bohdan T. Kulakowski & John F. Gardner Platforms: Matlab

HOT is a package originally constructed for combustion modeling in Matlab. It calculates common thermodynamic properties such as enthalpy, specific heat, entropy, internal energy, gamma, ideal gas constant, molecular weight, etc Platforms: Matlab

Highlights include:d-deD? Integrating data sourcesd-deD? Valuing and creating a variable annuity productd-deD? Application development and deploymentThis webinar is relevant to practitioners or academics in finance whose focus is quantitative analysis, modeling, risk analysis, and... Platforms: Matlab

ORMA (Oligonucleotide Retrieving for Molecular Applications) is a series of integrated scripts in Matlab, which performs an accurate search of all the positions able to specifically discriminate one species among homologous ones. ORMA also performs an accurate selection of high-quality... Platforms: Matlab

Academic Project aimed at capturing, modeling and predicting stock behavior Platforms: Matlab

Molecular Weight Calculator is an easy to use program to calculate the mass of a molecular formula and composition of each atom. Allows entry of chemical formulas in commonly-used syntax both empirical and molecuar formula.This innovative program provides a fast and easy-to-use tool. This is an... Platforms: Pocket PC 2002

CoCreate OneSpace Modeling Personal Edition (PE) is the world's first free 3D CAD software which follows a Dynamic Modeling based approach. This software stands apart from any other CAD system you may have tried or are currently using. Download a FREE version of OneSpace Modeling PE today... Platforms: Windows

The SLPSoft Interactive Application Modeling enables managers and employees to produce a quick model of a project without providing a lot of details of the items or the entities that make up that project. For instance, while a project manager is talking to a customer, the customer may ask the... Platforms: Windows, Other

The Microsoft SDL Threat Modeling Tool allows for early and structured analysis and proactive mitigation and tracking of potential security issues. The SDL Threat Modeling Tool helps engineers analyze the security of their systems to find and address design issues early in the software lifecycle.... Platforms: Windows

The Eclipse XML Meta-Modeling Tools project provides tools like editors, extended validation and generators for developing xml based meta-models and domain-specific languages in eclipse. Platforms: Windows, Mac, Linux

The Generic Eclipse Modeling System is an MDD tool for Eclipse that allows for the rapid development of GEF modeling plugins. In GEMS, developers specify rules for a domain language using a metamodel and the tool generates a plugin for the specification Platforms: Windows, Mac, Linux

The Java Modeling Language (JML) is a behavioral interface specification language that can be used to specify the behavior of Java modules (as in design by contract -- DBC). It has many tools to do assertion checking, unit testing, etc. Platforms: Windows, Mac, Linux

JMCAD is an program for the modeling and simulation of complex dynamic systems. This includes the ability to construct and simulate block diagrams. The visual block diagram interface offers a simple method for constructing, modifying and maintaining complex system models. The simulation engine... Platforms: Windows, Mac, Linux

JPhysChem - a mathematical modeling toolbox designed to provide an abstract layer and a comprehensive graphical front-end for general model building and specific modeling and data processing in the field of mass spectrometry and physical chemistry. Platforms: Windows, Mac, Linux

The Object-Role Modeling (ORM) standard version 2, associated schemas and generation tools, and a reference implementation in the form of the Natural Object-Role Modeling Architect for Visual Studio (NORMA) product. Platforms: Windows, Mac, Linux

NOC is a open source development toolkit and a powerful molecular explorer for protein structure visualizing,analysis,crystallographic mapping, modeling, and refinement, Gromacs/Amber MD trajectories displaying,movie making... Platforms: Windows, Mac, BSD, Linux

PFMD performs a Molecular Dynamics simulation of some polarizable fluids at the liquid state by means of a dissociable potential. Supported molecules are H2O (water) and MX3, where M is a metal among Al, Fe, or Ga and X is a halogen among Cl, Br, or I. Platforms: Windows, Mac, Linux