Mike Holmes Bio

Bio::NEXUS::TreesBlock is a Perl module that represents TREES block of a NEXUS file. SYNOPSIS if ( $type =~ /trees/i ) { $block_object = new Bio::NEXUS::TreesBlock( $block_type, $block, $verbose ); } If a NEXUS block is a Trees Block, this module parses the block and stores the tree data....

Bio::TreeIO::svggraph is a simple output format that converts a Tree object to an SVG output. SYNOPSIS use Bio::TreeIO; my $in = new Bio::TreeIO(-file => input, -format => newick); my $out = new Bio::TreeIO(-file => >output, -format => svggraph); while( my $tree = $in->next_tree ) { my...

Bio::NEXUS::UnalignedBlock is a Perl module that represents an UNALIGNED block of a NEXUS file. SYNOPSIS if ( $type =~ /unaligned/i ) { $block_object = new Bio::NEXUS::UnalignedBlock($type, $block, $verbose); } This is a class representing an unaligned block in NEXUS file METHODS new...


Platforms: *nix

Bio::NEXUS::Functions is a Perl module that provides private utility functions for the module. This package provides private functions that are not object-specific..


Platforms: *nix

Bio::NEXUS::WeightSet is a Perl module that represents column weights in alignment ( for each character). SYNOPSIS new Bio::NEXUS::WeightSet($name, @weights, $iswt); A module representing column weights in alignment (for each character) METHODS new Title : new Usage : $node = new...


Platforms: *nix

Bio::Location::CoordinatePolicyI is an abstract interface for objects implementing a certain policy of computing integer-valued coordinates of a Location. SYNOPSIS # get a location, e.g., from a SeqFeature $location = $feature->location(); # examine its coordinate computation policy print...


Platforms: *nix

Bio::Phylo::Treedrawer::Svg is a Perl module that creates svg tree drawings. No serviceable parts inside. This module creates a scalable vector graphic from a Bio::Phylo::Trees::Tree object. It is called by the Bio::Phylo::Treedrawer object, so look there to learn how to create tree drawings....


Platforms: *nix

Bio::NEXUS::NotesBlock is a Perl module that represents a NOTES block in a NEXUS file. Placeholding module for the Notes Block class..


Platforms: *nix

OntologyEngineI is a Perl interface a minimal Ontology implementation should satisfy. This describes the minimal interface an ontology query engine should provide. It intentionally doesnt make explicit references to the ontology being a DAG, nor does it mandate that the ontology be a...


Platforms: *nix

Mike's Marbles is a collection of many block-falling and marble-shooting puzzlers with style. Large graphics fill any monitor size, with fast and smooth animation.


Platforms: Mac

Bio::NEXUS::SetsBlock is a Perl module that represents SETS block of a NEXUS file. SYNOPSIS $block_object = new Bio::NEXUS::SetsBlock($block_type, $block, $verbose); Parses Sets block of NEXUS file and stores Sets data. METHODS new Title : new Usage : $block_object = new...


Platforms: *nix

Bio::OntologyIO::simplehierarchy is a base class parser for simple hierarchy-by-indentation type formats. SYNOPSIS use Bio::OntologyIO; # do not use directly -- use via Bio::OntologyIO my $parser = Bio::OntologyIO->new ( -format => "simplehierarchy", -file => "pathology_terms.csv",...


Platforms: *nix

Bio::ClusterI module is a cluster Perl interface. SYNOPSIS # see the implementations of this interface for details but # basically my $cluster= $cluster->new(-description=>"POLYUBIQUITIN", -members =>[$seq1,$seq2]); my @members = $cluster->get_members(); my @sub_members =...


Platforms: *nix

Bio::NEXUS::MatrixBlock is a Perl module that provides functions for handling blocks that have matrices. SYNOPSIS This module is the super class of Characters, Unaligned, and Distances block classes, and indirectly it is a super-class of Data and History blocks, which are both sub-classes of...


Platforms: *nix

Any node-type can be assigned as the bio or Bio module can provide its own node type. The bio can display on the users' profile pages and/or it can add "View [username]'s [Bio]" links to nodes.Installation - Unpack in your modules folder (usually /sites/all/modules/) and enable under Administer >...


Platforms: Windows, Mac, *nix, PHP, BSD Solaris

Features - Listing profiles by role - Restricting access to profiles by both who is viewing the profile and who owns the profileInstallation - Unpack in your modules folder (usually /sites/all/modules/) and enable under Administer > Site Building > Modules.  Requirements: - Drupal 5.x - Drupal...


Platforms: Windows, Mac, *nix, PHP, BSD Solaris

Bio-Formats was specially designed as an accessible Java-based tool that can be used for reading and writing life sciences image file formats. It is capable of parsing both pixels and metadata for a large number of formats, as well as writing to several formats.


Platforms: Windows

The Lost Cases of Sherlock Holmes is a lavish mystery adventure game, featuring 16 unique cases of forgery, espionage, theft, murder and more. Investigate hundreds of potentially relevant clues and lively characters in each mysterious story. Explore 40 historically accurate locations around...


Platforms: Mac

Simply adds a author bio after every post automatically. You can integrate Twitter and Facebook profiles.Installation :Step 1. Download the Plugin from http://wp-adm.inStep 2. Upload it in you wp-content/plugins dirrectory.Step 3. Activate from Admin panel.Step 4. Write a proper author bio for...


Platforms: PHP

About Mike s Marbles - Several block-falling and marble-shooting puzzlers - Highly detailed graphics - Fast and smooth animation and effects - Scalable board size, to fill small monitors, or even the biggest - One to four human and/or computer players - Abilty to "wrap" blocks from edge to...


Platforms: Mac