Microscopy

SimPartCohImg uses 'sum over the source' algorithm to compute the images produced by partially coherent (i.e., non-fluorescent) imaging systems such as phase microscopes and optical lithography systems. This is perhaps the first freely available code for this purpose. Total image is the sum of... Platforms: Matlab

The MIPAV (Medical Image Processing, Analysis, and Visualization) application enables quantitative analysis and visualization of medical images of numerous modalities such as PET, MRI, CT, or microscopy. Using MIPAV's standard user-interface and analysis tools, researchers at remote sites (via... Platforms: Mac

The GXSM is the Gnome X Scanning Microscopy project, it is a bit more than just a piece of software (the GXSM itself), there is full hardware support for DSP cards including open source DSP software and a growing set of SPM related electronics. And it is not limited to SPM at all, it provides... Platforms: *nix

Gwyddion is a modular program for SPM (scanning probe microscopy) data visualization and analysis. Primarily it is intended for analysis of height fields obtained by scanning probe microscopy techniques (AFM, MFM, STM, SNOM/NSOM), however it can be generally used for any other height field and... Platforms: Windows, Mac, *nix, C/C++, BSD

High Performance 3D-4D imaging software for a better insight to your science. Volocity is the universal solution for 3D analysis of fluorescence microscopy images. A collection of high performance 3D imaging software products, Volocity lets you turn images into understanding, relate cellular... Platforms: Windows

High Performance 3D-4D imaging software for a better insight to your science. Volocity is the universal solution for 3D analysis of fluorescence microscopy images. A collection of high performance 3D imaging software products, Volocity lets you turn images into understanding, relate cellular... Platforms: Windows

Gwyddion is a modular program for SPM (scanning probe microscopy) data visualization and analysis. Primarily it is intended for analysis of height fields obtained by scanning probe microscopy techniques (AFM, MFM, STM, SNOM/NSOM), however it can be generally used for any other height field and... Platforms: Linux

GoFigure2 is an open-source, cross-platform application for visualizing, processing and analyzing of multidimensional microscopy data. Users can visualize, segment and track cells through time, detect cell-division and ultimately generate lineages. Platforms: Windows, Mac, Linux

GXSM -- Gnome X Scanning Microscopy: A multi-channel image and vector-probe data acquisition and visualization system designed for SPM techniques (STM,AFM..), but also SPA-LEED. A plug-in interface allows any user add-on data-processing and special hardware and instrument support. Based on... Platforms: Windows, Mac, BSD, Linux

This is the software to analysis the atomic force microscopy images. Average feature size and area can be calculated using this software.Steps to follow -1 - First remove any additional part of the image not included in the scan area using software like paint etc.2 - Browse the image and load it... Platforms: Matlab

This directory contains m-functions for reading and writing files used in electron microscopy and 3D reconstruction. The file formats those used by the IMAGIC software package (Image Science GmbH; EMAN and Frealign are public-domain programs that also use this format), the MRC program library,... Platforms: Matlab

SPIDER is a free image processing system for electron microscopy. It is used for three-dimensional reconstruction of single particle macromolecules, multivariate statistical classification, and electron tomography. See the extensive documentation and many available techniques at... Platforms: Matlab

An automated data analysis method for atmospheric particles using scanning transmission X-ray microscopy coupled with near edge X-ray fine structure spectroscopy (STXM/NEXAFS). This method is applied to complex internally mixed submicron particles containing organic and inorganic material.... Platforms: Matlab

3D reconstruction algorithm for electron cryo-microscopyTraditional single particle reconstruction methods use either the Fourier or the delta function basis to represent the particle density map. We propose a more flexible algorithm that adaptively chooses the basis based on the data. Because... Platforms: Matlab

Segment the vessel branches from dynamic image of fluorescent microscopy== Install ======- Add all attached files to matlab path- Download "Better Skeletonization" from following URL and add to matlab path http://www.mathworks.com/matlabcentral/fileexchange/11123-better-skeletonization==... Platforms: Matlab

ImageAnalysisTools is a java library developed for processing and quantifying biological microscopy images. We use it particularly for the identification and quantification of centromeres and kinetochores, but the underlying infrastructure, which emphasizes rapid and easy development of new... Platforms: Mac

Image In Focus ver 3.3 Image In Focus software combines various out of focus images to create a single Montage composite in-focus images. Various microscope or digital camera images, each taken with a different focal plane can be combined (or stacked) into one perfectly... Platforms: Windows, Other

The Screen Protractor allows you to easily and quickly measure any angle on the screen to the nearest Degree or Radian. This perfect compliment to the Screen Calipers, the Protractor is simple and easy to use with any program. The uses of the Protractor are many and varied, here are just a few: -... Platforms: Windows

The Screen Protractor allows you to easily and quickly measure any angle on the screen to the nearest Degree or Radian. This perfect compliment to the Screen Calipers, the Protractor is simple and easy to use with any program. The uses of the Protractor are many and varied, here are just a few: -... Platforms: Mac

Spins is an arcade maze game that puts you incontrol of a spinning top-like device. As you navigate through the obstacles, you must collectvarious power-ups to get you out of the tightsituations that arise. Graphics are 2D andrendered from a top-down perspective. Spins is a challenging and... Platforms: Mac