Metabolomics

Metmask is a tool written in python for managing chemical identifiers for metabolomics experiments. It can incorporate identifiers from local textfiles, several online databases, query PubChem and record all found associations in a local sqlite database. Platforms: Windows, Mac, Linux

GO-Elite is a software tool designed to identify a minimal non-redundant set of Gene Ontology (GO) biological terms and pathways to describe a particular set of input identifiers. This tool calculates over-representation statistics similiar to the program MAPPFinder and subsequently produces... Platforms: Mac

AMDORAP, which is actually short for Accurate M/z Detection method for LC-OrbitRAP was designed as a preprocessing method for high-resolution LC-MS. (e.g., the orbitrap). An easy-to-use, flexible and automated tool is a key to success in metabolomics studies. This is particularly the case in... Platforms: Windows

Maltcms is a JAVA API for preprocessing, alignment, analysis and visualization of data stored in open file formats used in Proteomics and Metabolomics research. * Changed build system to Maven 2. Access to maven repository can be requested by contacting the project owner. * Fixed a bug in the... Platforms: Mac

Metaboflux is a generic approach for predicting flux distribution in metabolic networks under multiple and various constraints deducted from the experiments, to increase the biological relevance of the model. Features . Muti-objective and multi-criteria analysis . Flux analysis .... Platforms: *nix