John Deere Pathways

A Tool for Retrieval, Visualization and Analysis of biological Pathways. Import a Gene or Protein Set from any Excel file. Automatically find signaling Pathways from KEGG. Integrate your Data in Seconds with a live interactive Force-directed Layout.

SBMLforge is a tool that enables the user to convert and merge KEGG metabolic and signaling pathways (KGML format) to create a single SBML pathway model.

SchemaSpyGUI is a graphical user interface for the tool SchemaSpy from John Currier. It is java-based and sits on top of SchemaSpy. It provides a graphical interface for those of us which appreciate the comfort of windows/mouse based applications.


Platforms: Windows, Mac, Linux

Stochastic simulator for signaling pathways occuring in biological cells. Handles reaction-diffusion processes in 3D tetrahedral meshes.


Platforms: Mac, BSD, Linux

Synthetic Biology Software Suite (SynBioSS) is composed of a wiki for biochemical kinetic constants, a graphical interface for simulating synthetic biological pathways, and a simulator that runs on either a desktop or supercomputer.


Platforms: Windows, Mac, BSD, Linux

Twisted Life is a video game that uses a variant of John H. Conway's Life cellular automaton in which Life forms twist around the center of the universe.


Platforms: Windows, Mac, Linux

This tool is a platform-independent software to create individual pathways and to examine biological networks of distributed, heterogeneous data sources, e.g. KEGG, BRENDA.


Platforms: Windows, Mac, Linux

Crepuscular Life is a free, interactive OpenGL screensaver which runs John Conway’s Game of Life at full display resolution. Features: * Keeps the board in motion by regularly spawning spaceships * User can change the game speed & cell count while saver runs * Preserves the board state...


Platforms: OS X 10.3 Panther or later

Let's say you have the two Address Book entries: "John Doe" and "Jane Doe". If John and Jane are married, you may set the appropriate "Related Name" fields in Address Book to denote this fact. To completely realize the relationship you will need to add a spouse relationship to both John and...


Platforms: Mac

Dock Lawn by Matthew Bice features 14 Andy Warhol folder icons including Campbell's Soup, Chairman Mao, Green, Grey, John Wayne, Marilyn Monroe and much more. Icons courtesy of the Xicons.com The icon sets featured here on Mac OS X Downloads represent only a fraction of the Mac OS X icons...


Platforms: Mac

John "Loose" Kannon is the leader of a special team of hardened cops that aren't afraid to bend the law to clean up the streets. But when they kill a local drug lord's brother and steal millions in cash, Kannon's whole team becomes a target of reven


Platforms: Mac

John Smith (generic name, you can choose your own) is a man in trouble. He’s lost everything he has in the Stock Market, his house is in danger of being washed away due to erosion. All he has is a life insurance policy. Depressed and despondent, he decide


Platforms: Mac

At the beginning of Episode Two, we recap up to the point where Nick the Nose is about to shoot John (the player). The turrets quickly dispatch the artificial life from of Nick the Nose. If John decides to help HEIDI, she informs him that she's hiding in


Platforms: Mac

Written for students in grades 3 and up, our JFK biography program brings the challenges and achievements of President John F. Kennedy to life. Our JFK app combines 12 archival video clips, with 100 photos to bring the story of President Kennedy's l


Platforms: Mac

Do not only take on the role of the hero Robin Hood, but also the roles of his faithful vassals and take them to the battle field against the nasty Prince John Lackland. In doing so you are able to enjoy the fabulous English landscape of 1190 as well as t


Platforms: Mac

Markdown for WordPress and bbPress (Markdown-WPBB) is based on the famed PHP Markdown Extra by Michel Fortin, in turn based on the original Perl version by John Gruber.InstallationUnpack and upload it to the /wp-content/plugins/ directory.Activate the plugin through the 'Plugins' menu in...


Platforms: Windows, Mac, *nix, PHP, BSD Solaris

A minor improvement on the fminsearchbnd (bounded fminsearch) created by John D'Errico. Changes:% Changes from fminsearchbnd:Changes from fminsearchbnd:1) in options structure, user may pass an 'output function' and 'plot function' to fminsearch.Original fminsearchbnd handled the output function...


Platforms: Matlab

For small number of coins, and a listing of all combinations, a better program to use is John's program "Partitions of an Integer" (see discussion below)If you have a huge set of coins, and just want the number of combinations; this might be a good program as it doesn't list the combinations and...


Platforms: Matlab

function ind=datasetStrFind(dset,str,vars)like strfind.m but applies on datasets instead of cell arrays.The "dataset" type is a matlab type which allows to store data in a similarway than database tables. Database operations such as join can by applied(see the function join). However I did not...


Platforms: Matlab

Nonlinear median smoothers were popularized by John Tukey some years ago. The M-files in this suite are the embodiment of several. Rows or columns of a data matrix are smoothed individually. A contents file gives details and sample code.


Platforms: Matlab