Genomic Cloning Peroxidase Gene

GENE Graph Export Engine is an advanced XML exporter. GENE Graph Export Engine is a complex convertor/framework for multi-namespace XML transforming and exporting. It is able to convert various XML types including SVG, DocBook, MathML, XSL-FO, and their combinations into a wide area of output...

Bio::MCPrimers is a Perl module to create molecular cloning PCR primer pairs for a given gene so that the gene can be directionally inserted into a vector. Solver is generic, restriction enzymes and their order in the vector are specified in the caller. XPORT SUBROUTINES sub find_mc_primers...

Gene Inspector is a unique combination of a versatile electronic laboratory research notebook and a comprehensive sequence analysis product. Using GI, the user has the ability to define an entire 'suite of analyses' that can be performed each time they (or anyone in the lab) has a new sequence,...


Platforms: Mac

The Gene Construction Kit allows graphic manipulation of DNA sequences and sophisticated plasmid drawing options. It has an award winning interface design that allows graphic manipulation of DNA sequences in addition to providing sophisticated drawing capabilities. GCK was named the "Best Plasmid...


Platforms: Mac

This program is a parser that abstract a data structure from a given Entrez Gene record, and users of the parser can decide what to do/extract from the data structure. Perl Entrez Gene Parser project provides Perl parsers for NCBI's Entrez Gene based on regular expression, Parse::RecDescent,...


Platforms: Windows, Mac, *nix, Perl, BSD Solaris

Gene Construction KitO brings intuitive productivity to the molecular biology researcher's MAC, allowing effortless manipulation of DNA - either graphically or as sequence text. GCK eliminates tedious examination of sequence data by automatically identifying ORF's and silent mutations, and easily...


Platforms: Mac

MacVector... Researchers who want a simple but comprehensive desktop sequence analysis application continually turn to MacVector, the leading sequence analysis package for the Macintosh. MacVector provides sequence editing, primer design, Internet database searches, protein analysis, sequence...


Platforms: Mac

EASIS Drive Cloning helps you cloning or copying hard drives, partitions or other storage devices bit-wise. Often you need to copy bytes from one hard drive to a second for upgrade your computer or laptop. Sometimes you need to copy the the bytes from the hard drive for data recovery reasons....


Platforms: Windows

Conrad is both a high performance Conditional Random Field engine which can be applied to a variety of machine learning problems and a specific set of models for gene prediction using semi-Markov CRFs.


Platforms: Windows, Mac, Linux

Disease Gene Profiler (DGP) comprises of a set of (bioinformatics) tools that can be used to identify the genes underlying susceptibility to common multifactorial diseases (such as diabetes, asthma and cancer) using freely available datasources.


Platforms: Windows, Mac, Linux

Perl Entrez Gene Parser project provides Perl parsers for NCBI's Entrez Gene based on regular expression, Parse::RecDescent, Parse::Yapp and Perl-byacc. Some can parse human genome annotations in minutes. Documentation and user guides are provided.


Platforms: Windows, Mac, Linux

The home of the Gene Ontology project on SourceForge, including ontology requests, software downloads, bug trackers, and much, much more.


Platforms: Windows, Mac, Linux

Gene-Environment iNteraction Simulator 2 (GENS2) simulates interactions among two genetic and one environmental factor and also allows for epistatic interactions. GENS2 is based on data with realistic patterns of linkage disequilibrium, and imposes no limitations either on the number of...


Platforms: Windows, Mac, Linux

GRaPe - a platform-independent software tool for building integrative gene-reaction-protein (GRP) networks. It generates the kinetic equations for each reaction and outputs a SBML document. It also implements two methods for parameter estimation.


Platforms: Windows, Mac, Linux

IMAS is a Visual Analytics system for the discovery of knowledge in genomic information. IMAS enables genomic scientists to rapidly analyze and visualize a set of microbial genomic sequences using tools such as Glimmer, Blast, Clustal-W, Primer3.


Platforms: Windows, Mac

LiveGMS is a PHP/MySQL driven gene editor for the game Creatures 3 / Docking Station. It provides a platform independent online editor with most features other binary genetics editors have.


Platforms: Windows, Mac, Linux

a simple function that returns a colormap, C, for visualizing gene expression. C is just a N x 3 matrix [R G B] describing the range of color values.example usage: C = exp_colormap('blue-yellow',64); colormap(C);called without any arguments, it returns a [3 x 64] green-red colormap.options for...


Platforms: Matlab

A research fellow at Harvard asked me to write a program to search for gene sequence, such as d-de?TCCd-deOao, and record the next 4 codes. The data file was 14Gb. He tried some matlab codes, and the system froze, or kept running and never stopped.I first tested using a loop method (V1.0). It...


Platforms: Matlab

The script is a Matlab implementation of reference gene selection reported inJo Vandesompele et al, "Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes", Genome Biology 2002, 3 (7).


Platforms: Matlab

Genomic signature using Chaos game representation of frequencies. The zip file includes two examples of genomic signature (A. fulgidus).References:[1] P.J. Deschavanne, A. Giron, J. Vilain, G. Fagot, and B. Fertil. Genomic Signature: Characterization and Classification of Species Assessed by...


Platforms: Matlab