Genome

GWCNV is a genome-wide algorithm for detecting CNV associations with diseases. It works directly on a transformation of intensity data. It is powerful and sensitive in detecting small CNV associations, and retains high power for large CNVs. Platforms: *nix

Lucy is a program for DNA sequence quality trimming and vector removal. Its purpose is to process DNA sequence data acquired from DNA sequencers to prepare the data for downstream processing applications such as genome assembly. Platforms: *nix

Bowtie is an ultrafast, memory-efficient short read aligner. It aligns short DNA sequences (reads) to the human genome at a rate of over 25 million 35-bp reads per hour. Bowtie indexes the genome with a Burrows-Wheeler index to keep its memory footprint small: typically about 2.2 GB for the human... Platforms: *nix

This image editing software consists of two unique Photoshop compatible plug-ins, Curl and Twist. The plug-ins provides you with an interactive environment to make real three-dimensional page wrapping effect. Curl makes a turning page effect to your images while Twist gives a wrenching page... Platforms: Windows

Bio::Tools::Run::PiseApplication::consensus is a Perl module. Bioperl class for: CONSENSUS Identification of consensus patterns in unaligned DNA and protein sequences (Hertz, Stormo) References: G.Z. Hertz and G.D. Stormo. Identification of consensus patterns in unaligned DNA and protein... Platforms: *nix

GO::TermFinder is a Perl module that can identify GO nodes that annotate a group of genes with a significant p-value. This package is intended to provide a method whereby the P-values of a set of GO annotations can be determined for a set of genes, based on the number of genes that exist in the... Platforms: *nix

EnsEMBL::Web::Record is a family of modules used for managing a users persistant data in a database. SYNOPSIS Many web sites now encourage users to register and login to access more advanced features, and to customise a site to their needs. The EnsEMBL::Web::Record group of Perl modules is... Platforms: *nix

Nowadays, the use of so-called RNA interference is a common technique applied by molecular biologists to determine the function of the many genes in our genome.Unfortunately, the design of oligonucleotides, the building blocks for this technique, is a time-consuming and error-prone task. iRNAi... Platforms: Mac

MacVector... Researchers who want a simple but comprehensive desktop sequence analysis application continually turn to MacVector, the leading sequence analysis package for the Macintosh. MacVector provides sequence editing, primer design, Internet database searches, protein analysis, sequence... Platforms: Mac

PGDSpider was built using the Java programming language as a conversion app for population genetics and genomics programs. The software facilitates the data exchange possibilities between programs for a vast range of data types (e.g. DNA, RNA, NGS, microsatellite, SNP, RFLP, AFLP, multi-allelic... Platforms: Windows

Gitools, is a framework for analysis and visualization of genomic data. Data and results are represented as browsable heatmaps. Gitools allows to import data directly from IntOGen and Biomart. Platforms: Windows

Geneious Pro is an integrated, cross-platform bioinformatics software suite for manipulating, finding, sharing, and exploring biological data such as DNA sequences or proteins, phylogenies, 3D structure information, publications, etc. It features sequence alignment and phylogenetic analysis,... Platforms: Windows

Geneious Pro is an integrated, cross-platform bioinformatics software suite for manipulating, finding, sharing, and exploring biological data such as DNA sequences or proteins, phylogenies, 3D structure information, publications, etc. It features sequence alignment and phylogenetic analysis,... Platforms: Windows

GNomEx is Genomic LIMS and Analysis Project Center designed by the Huntsman Cancer Institute for use by microarray and next generation sequencing core facilities and large research laboratories. KWs: Illumina, Affymetrix, Agilent, MAGE, MySQL/Flex... Platforms: Windows

RetroMap is a little app designed to assist you in the analysis of LTR retroelements. It is not particularly great for comprehensive identification of elements found in highly nested contexts. Only the most internal element of those which are nested is likely to be identified as a complete... Platforms: Windows

QDMR, which is actually short for Quantitative Differentially Methylated Regions is built to be a quantitative approach to quantify methylation difference. It can also be used to identify DMRs from genome-wide methylation profiles by adapting Shannon entropy. The platform-free and species-free... Platforms: Windows

Genovar is a stand-alone software built using the Java programming language in order to detect unknown genomic variants. The program can also analyze SNP-related copy number variant regions, and comprehensively visualize genomic data such as array CGH and sequence alignments results. Platforms: Windows

VCMap, also known as The Virtual Comparative Map was developed in order to explore the conserved synteny between Rat, Mouse and Human. Genomes and annotations of additional species (Chicken, Cow, and Pig) were added to the database of information accessible to VCMap. VCMap was developed with... Platforms: Windows

A powerful and user-friendly graphical software designed to conduct large scale exploration of biological sequence databanks and related information (functional, taxonomy, pathways, mutations, etc). KoriBlast can be used for a wide range of applications in genomics and proteomics, such as: full... Platforms: Mac

Soluto is a great application that allows you to analyze your boot time, view which applications are slowing it down and improve it as you like. Soluto's goal is to bring an end to the frustrations PC users encounter. We have all come to expect our computers to be sluggish or unresponsive at... Platforms: Windows