Genetic Disorder

HaploView is a Java based tool for use by biologists in the study of genetic haplotype data. It provides a quick, easy interface to many common tasks involved in such analyses.

JBeagle is a highly extensible toolkit for creating and running evolutionary algorithms, such as genetic algorithms and genetic programming.It aims to provide support for parallel processing, configuration and tracking via the GUI or command line, et

A free, open source, artificial life, genetic evolution simulation in which small creatures called Neds roam the world, mate with one another, harvest food, eat and eventually die.


Platforms: Windows, Mac, Linux

VCAKE is a genetic sequence assembler capable of assembling millions of small nucleotide reads even in the presence of sequencing error. This software is currently geared towards de novo assembly of Illumina's Solexa Sequencing data.


Platforms: Windows, Mac, Linux

The algorithm that modeling the processof arbitrary picking matches from matchboxes with equal probability. The process will terminate when one of matchboxes get empty


Platforms: Matlab

http://simulations.narod.ru/There is a set of cities (points) in 2d plane. Each city has road to each city. We need to find loop-path that will be in each city only one time and path length is minimal. There are lot of paths with different lengths. A path can have crossover with another path and...


Platforms: Matlab

The function generates sequency(Walsh) ordered Hadamard matrix useful for image processing, signal processing, genetic algorithms etc.


Platforms: Matlab

FONZIE is a bioinformatic tool written in Python developed for the genetic cartography speciality. FONZIE allow as well to find markers on a set of sequences than to find associate oligonucleotides. http://www.biomedcentral.com/1756-0500/3/322/abstra Features . Requirements: Python, Tandem...


Platforms: *nix

Simple genetic programming framework. Features a robust set of interfaces and standard implementations for rapid development and ease of experimentation.


Platforms: Windows, Mac, Linux

Molevolve is a Java library for running a Genetic Algorithm to model the 3-dimensional structures of peptide chains from amino-acid sequences. Client code can specify its own peptide chain model, fitness functions and GA operations. Requires JDK 1.5.


Platforms: Windows, Mac, Linux

openSputnik is a robust distributed platform for massive scale precalculation of genetic and genomic data using contemporary bioinformatics methods. Annotated DNA, RNA and protein sequences are stored as binary objects in a variery of relational database


Platforms: Windows, Mac, Linux

Please see PORTOPTGADS, by following link 'Published m-files' below.PS. The cool picture is a visualization of Rastrigin's function, taken from Genetic Algorithm and Direct Search Toolbox documentation.


Platforms: Matlab

TreeStat is an application that can process a set of trees in a PHYLIP or NEXUS format tree file and calculate a number of summary statistics for each. These are saved in a tab-delimited file for analysis in Tracer or statistics packages. A range of summary statistics are included: *...


Platforms: Mac

We use the genetic algorithm (gatool) to determine the four parameters of the implicit Forst-Kalkwarf-Thodos Model. Predictions are in perfect agreement with data of vapour pressure of iodobenzene versus temperature for a temperature range from 380.15 K to 580.15 K.


Platforms: Matlab

jrgp is a strong-typed Genetic Programming system, which features a graphical interface (gool) to setup and run GP-problems and a tool (fs-d) that greatly simplifies the definition of a GP-problem.


Platforms: Windows, Mac, Linux

The script allows to easily fit predefined complex analytical laws exploiting the potentiality of Genetic Algorithms.The script receives as input the handle to the analytic laws to be fitted to data. Such law may depend on multiple variables and several parameters. This optimization approach may...


Platforms: Matlab

This script executes some basic calculations from the following article.Leonard AC, Franson SE, Hertzberg VS, Smith MK & Toth GP (1999) Hypothesis testing with the similarity index. Molecular Ecology 8: 2105-2114.Please consult this article for any conceptual or mathematical details.The script...


Platforms: Matlab

Awakener aims to provide a Java library for solving practical, real world optimisation problems by means of genetic algorithms (turnkey algorithms for >= 90% of industry problems). Awakener extends Sleepwalker with specific algorithms.


Platforms: Windows, Mac, Linux

Easy install web server for Genetic and Molecular Biological Laboratory so that PI can update lab homepage himself. Also serve as Lab database server that store DNAStrider plasmid , order tracking and mouse colony database.


Platforms: Windows, Mac, Linux

Motofit co-refines Neutron and X-ray reflectometry data, using the Abeles matrix / Parratt recursion and least squares fitting (Genetic algorithm or Levenberg Marquardt). It works in the IGOR Pro environment (TM Wavemetrics).


Platforms: Windows, Mac, Linux