Gene Tests

Conrad is both a high performance Conditional Random Field engine which can be applied to a variety of machine learning problems and a specific set of models for gene prediction using semi-Markov CRFs.

Disease Gene Profiler (DGP) comprises of a set of (bioinformatics) tools that can be used to identify the genes underlying susceptibility to common multifactorial diseases (such as diabetes, asthma and cancer) using freely available datasources.

Perl Entrez Gene Parser project provides Perl parsers for NCBI's Entrez Gene based on regular expression, Parse::RecDescent, Parse::Yapp and Perl-byacc. Some can parse human genome annotations in minutes. Documentation and user guides are provided.


Platforms: Windows, Mac, Linux

The home of the Gene Ontology project on SourceForge, including ontology requests, software downloads, bug trackers, and much, much more.


Platforms: Windows, Mac, Linux

Gene-Environment iNteraction Simulator 2 (GENS2) simulates interactions among two genetic and one environmental factor and also allows for epistatic interactions. GENS2 is based on data with realistic patterns of linkage disequilibrium, and imposes no limitations either on the number of...


Platforms: Windows, Mac, Linux

GRaPe - a platform-independent software tool for building integrative gene-reaction-protein (GRP) networks. It generates the kinetic equations for each reaction and outputs a SBML document. It also implements two methods for parameter estimation.


Platforms: Windows, Mac, Linux

LiveGMS is a PHP/MySQL driven gene editor for the game Creatures 3 / Docking Station. It provides a platform independent online editor with most features other binary genetics editors have.


Platforms: Windows, Mac, Linux

Ham Tests is an application that provides practice tests for the U.S. amateur radio qualification exams. All three question pools are available, Technician, General and Extra. You can either take a randomly generated test or run through the entire questio


Platforms: Mac

Based on Australian Schools Maths Naplan Tests Eureka's Naplan Style Maths Tests for Year 3 is a revolutionary maths tests creator that help students to reinforce maths lessons taught in class and in particular, the the type of questions asked


Platforms: Mac

Based on Australian Schools Maths Naplan Tests Eureka's Naplan Style Maths Tests for Year 5 is a revolutionary maths tests creator that help students to reinforce maths lessons taught in class and in particular, the the type of questions asked


Platforms: Mac

Based on Australian Schools Naplan Tests. Eureka's Naplan Style Maths Tests for Year 7 is a revolutionary maths tests creator that help students to reinforce maths lessons taught in class and in particular, the the type of questions asked in Au


Platforms: Mac

Based on Australian Schools Naplan Tests. Eureka's Naplan Style Maths Tests for Year 9 is a revolutionary maths tests creator that help students to reinforce maths lessons taught in class and in particular, the the type of questions asked in Au


Platforms: Mac

Practice tests are a recommended method of preparing for your PMP® certification test. Five full 200 question timed practice test designed to give you the real test experience. Also includes a 50 question test on the math formulas you should k


Platforms: Mac

Exceptions provide very handy ways of performing simple tests. This script uses IsInt() function to check if the content of a string contains an integer.


Platforms: Windows, Mac, *nix, Python, BSD Solaris

Let us assume the following MIMO model:Y(k)=HX(k)+Y(k)This file can detect the number of sources, i.e the size of the vector X(k) from the received signal Y(k). The noise is assumed spatially white and the number of receivers must be strictly greater than the number of sources. For more details...


Platforms: Matlab

a simple function that returns a colormap, C, for visualizing gene expression. C is just a N x 3 matrix [R G B] describing the range of color values.example usage: C = exp_colormap('blue-yellow',64); colormap(C);called without any arguments, it returns a [3 x 64] green-red colormap.options for...


Platforms: Matlab

This is a set of functions that allows to test the weak form market efficiency and thus the predictability of the time series returns through various tests: direct and indirect test.The direct tests are the two versions (individual and joint)of the variance ratio of Lo and MacKinlay (1988).The...


Platforms: Matlab

A research fellow at Harvard asked me to write a program to search for gene sequence, such as d-de?TCCd-deOao, and record the next 4 codes. The data file was 14Gb. He tried some matlab codes, and the system froze, or kept running and never stopped.I first tested using a loop method (V1.0). It...


Platforms: Matlab

The script is a Matlab implementation of reference gene selection reported inJo Vandesompele et al, "Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes", Genome Biology 2002, 3 (7).


Platforms: Matlab

main executing reference usage: usage_draftLinesForBackProjectionTestThe objective is to draft lines used as biomedical phantoms For Back Projection Detectability Tests.Lines in several inclinations are to be used to observe if the back projection may cover and capture the lines.Such...


Platforms: Matlab