Gene Ontology Database

The home of the Gene Ontology project on SourceForge, including ontology requests, software downloads, bug trackers, and much, much more.

Each TS was tested for functional enrichment using annotation obtained from numerous ontologies or curated databases (Gene Ontology, KEGG, BioCarta, Swiss-Prot, BBID, SMART, NIH Genetic Association DB, COG/KOG, TargetScan, PicTar, TFBSConserved,...).

Microarray Gene Expression Database Group and OMG Gene Expression Standard (MAGE)


Platforms: Windows, Mac, Linux

GO-Elite is a software tool designed to identify a minimal non-redundant set of Gene Ontology (GO) biological terms and pathways to describe a particular set of input identifiers. This tool calculates over-representation statistics similiar to the program MAPPFinder and subsequently produces...


Platforms: Mac

Easily find and extract specific chemical reactions from the BioModels database. Features - Autosuggest for Gene Ontology terms - Update feature ensures access to the latest version of BioModels repository


Platforms: Mac

ErmineJ performs analyses of gene sets in expression microarray data or other genome-wide data that results in rankings of genes. A typical goal is to determine whether particular biological pathways are "doing something interesting" in the data. The software is designed to be used by biologists...


Platforms: Mac

GO::View is a Perl module that creates a gif or png image for visualizing the GO DAG. This perl module generates a graphic that displays the parent and child relationships of a selected GO term. It also provides the visualization for the GO::TermFinder perl module created by the Stanford...


Platforms: *nix

FastSemSim is specially designed as a handy Python-based efficient implementation of a couple of semantic similarity measures. The main target of the project is to enable fast and easy calculation of similarity between proteins and genes using the Gene Ontology


Platforms: Windows

MEFIT, also known as the Microarray Experiment Functional Integration Technology is developed as a system for microarray integration. Given any amount of microarray data, it predicts the probability of pairwise functional relationship for any gene pair within individual biological functions....


Platforms: Windows

Osprey is a software platform for visualization of complex interaction networks. Osprey builds data-rich graphical represetations from Gene Ontology (GO) annotated interactions maintained by the BioGRID.


Platforms: Windows, Mac, Solaris, Linux

Blast2GO?*A* is an ALL in ONE tool for functional annotation of (novel) sequences and the analysis of annotation data. Main Application Features are: Easy start up and low maintenance. Make sure you have JAVA, download Blast2GO from this site and start using the application. Updates are...


Platforms: Mac

Database Tour Pro is a cross-database tool. It works via ADO or BDE and was tested on Paradox, dBase, FoxPro, ASCII, CSV, Interbase, Firebird, Lotus, HTML, Oracle, SQL Server, MS Access, MS Excel, PostgreSQL, MySQL. Key features: -Accessing different types of databases. -Creating...


Platforms: Windows

db4o - database for objects - is a fast Java object database. A footprint of 80 kB saves device memory and allows online-download. Query-By-Example minimizes resource consumption and improves performance. Automatic object recognition permits zero-admin deployment. Integration with the Java...

This demo shows you the performance of the memory database system of the database engine developed by MemDB.

Database Genius is a database tool used to create and execute SQL statements in a easy to use graphical environment. After executing a query, the user can format the results to create a report and export it to html, excel, dbf, text, csv, windows meta file, and other file formats....


Platforms: Windows

We live during the Age of Information. And everyday we get more and more of it. In order to manage it effectively, to separate necessary information from unnecessary and to classify information properly, people created databases. But the problem with the average database is that it is complicated...


Platforms: Windows

Database Web Explorer is an universal Web-based database manager intended to work with DBMS in Internet/Intranet networks. Database Web Explorer allows you to manipulate the data stored in databases via Internet. As programm of the remote access the usual Web-browser is used. Database Web...


Platforms: BeOS, Windows, Mac

"Easy Invoicing UK " - is a simple to use, order management system. "Easy Invoicing UK" is not a stock control database application, but provides an easy way to present your clients with smart, elegantly styled Invoices... But, you can also track your Invoices, record payments or part payments,...


Platforms: DOS, OS/2, BeOS, Palm OS, Windows, Mac, *nix, Windows CE

"Easy Invoicing UK " - is a simple to use, order management system. "Easy Invoicing UK" is not a stock control database application, but provides an easy way to present your clients with smart, elegantly styled Invoices... But, you can also track your Invoices, record payments or part payments,...


Platforms: DOS, OS/2, BeOS, Palm OS, Windows, Mac, *nix, Windows CE

Database Gate is a SQL editor able to connect to every kind of database using ODBC. You can write and execute queries, create, alter or drop tables, execute stored procedures, get information about all the objects in the database, the columns list/primary or foreign keys/indexes of a table with...


Platforms: DOS, OS/2, BeOS, Palm OS, Windows, Mac, *nix, Windows CE