Diploid Genome Sequence

LSC Editor is designed to be a graphical editor and code generator for Live Sequence Charts (LSCs). The code generated follows a simple execution mechanism. It shows a possible execution path. for WindowsAll

Msc-generator is an easy to use, simple tool designed to enable you to draw Message Sequence Charts for telecommunication applications from textual description. Message Sequence Charts (MSCs) are a way of representing entities and message interactions over some time period and are often used in...

This is Matlab interface for the C++ implementation of the low discrepancy sequence generators Sobol from the GNU Scientific Library.It works under Linux.


Platforms: Matlab

Maximum length sequence assuming distinctvalues = baseVal^powerVal-1 [ms]=mseqSearch(powerVal,baseVal) OUTPUT: ms: generated maximum length sequence, of length basisVal^powerVal-1 such that all values occur with equal frequency=basisVal except zero, which occurs basisVal-1 times INPUT: baseVal:...


Platforms: Matlab

Simple interactive viewer of 3 orthogonal slices of 3D volume and of sequence of volumes. The interaction is performed by mouse left button or keyboard arrows.


Platforms: Matlab

SeqTEx: identification of average Next-Generation Sequence DNA length from cross-correlation This project is in development and will be submitting the manuscript soon. Check back for more information about using this program later.


Platforms: Mac

The Argo Genome Browser is the Broad Institute's production tool for visualizing and manually annotating whole genomes. This free and open source standalone Java 1.4 application provides: * Display of sequence and annotation tracks (from FASTA, Genbank, GFF, BLAST, BED, Wiggle (WIG), and...


Platforms: Mac

AA seriesA ofA programsA designedA forA accurateA andA highA speedA alignmentA ofA shortA readsA toA referenceA genomes.A NovelA featuresA includeA theA useA ofA baseA qualitiesA inA theA readsA andA ambiguousA nucleotideA codesA inA theA referenceA sequencesA forA alignment. KeyA features: -...


Platforms: Mac

pygr is a bioinformatics toolkit for sequence analysis and comparative genomics. pygr is highly scalable (e.g. one can easily query multi-genome alignments) and easy to use. Please see our new project page and wiki at http://code.google.com/p/pygr.


Platforms: Windows, Mac, Linux

These programmes are not heavily commented but infact are very simple and intutive to understand the Frequency hopping and related tasks.I have made two files for frequency hopping, one of them is not showing 6 proper impulsive peaks but other programme is infact showing them, In DSSS i have...


Platforms: Matlab

1) Pls note that the input sequence shall be a power of 4.2) Output bits are reversed in Quaternary System.


Platforms: Matlab

Chaotic Binary 32-bit generator according to the article in the IEEE 2001, University of Nebraska "Robust Chaotic PN sequence generation techniques" Created to 'UNIVPM Ancona 26/01/2009%%%To vary the length of the sequence generated (set to 127), just edit N.


Platforms: Matlab

Computes Direction Cosine Matrix from Euler angles (in radians) for six basic sequence of rotations around X(Roll),Y(Pitch) and Z(Yaw) axis.Allowed rotations sequences:xyz, xzy, yxz, yzx, zxy, zyxORrpy, ryp, pry, pyr, yrp, ypr----------------------------dcmfromeuler.mfunction to compute DCM from...


Platforms: Matlab

The code generates binary sequence of a given length and then writes it to a .txt file. the sequence generated is random in nature and this cipher was used in GSM for 2 decades


Platforms: Matlab

This script uses the gene name field(s) in a table downloaded from the UCSC Genome Browser to add gene names to an existing SVS marker map saved in the DSM file format. Note: Though the following instructions specify downloading a table containing genes based on the Mar. 2006 (NCBI36/hg18) Human...


Platforms: Mac

There are many techniques used to deal with the problem of high PAPR in OFDM systems. An effective one is the Partial Transmit Sequence. It is simulated for QPSK modulated 64-subband OFDM system.Moreover, a .mat file of 100000 such OFDM symbols is available.


Platforms: Matlab

The Kautz sequence is of the same family of sequences as the de Bruijn sequence, but has an additional requirement that it not contain any consecutive repeats of the same character.The sequence is, by nature, circular, so the final members of pairs (or triplets, quadruplets, etc...) are found...


Platforms: Matlab

Welcome to the SRMA home page. SRMA is a short read micro re-aligner for next-generation high throughput sequencing data. Sequence alignment algorithms examine each read independently. When indels occur towards the ends of reads, the alignment can lead to false SNPs as well as improperly placed...


Platforms: Mac

It is useful to have a counter which can count in an upward sequence as well as in a downward sequence. Here is a Three-Flip-Flop Up-Down Counter which has this provision designed using J-K Flip-Flops available in Simulink.


Platforms: Matlab

StarORF facilitates the identification of the protein(s) encoded within a DNA sequence. Using StarORF, the DNA sequence is first transcribed into RNA and then translated into all the potential ORFs (Open Reading Frame) encoded within each of the six translation frames (3 in the forward direction...


Platforms: Mac