Biology Qiuz

Mesquite is software for evolutionary biology, designed to help biologists analyze comparative data about organisms. Its emphasis is on phylogenetic analysis, but some of its modules concern population genetics, while others do non-phylogenetic multivariate analysis. Because it is modular, the...

OLIGO is a multi-functional program that searches for and selects oligonucleotides from a sequence file for polymerase chain reaction (PCR), DNA sequencing, site-directed mutagenesis, and various hybridization applications. It calculates hybridization temperature and secondary structure of...

Gene Construction KitO brings intuitive productivity to the molecular biology researcher's MAC, allowing effortless manipulation of DNA - either graphically or as sequence text. GCK eliminates tedious examination of sequence data by automatically identifying ORF's and silent mutations, and easily...


Platforms: Mac

Thyroid hormones play an essential role for metabolism, growth and differentiation. Therefore, exact regulation of thyroid hormone levels is vital for most organisms. Although the principles of thyrotropic feedback control have been described decades ago we still have not yet gained comprehensive...


Platforms: Mac

An award winning, integrated on-line learning environment where users experience the world of biology through discovery-based learning. GDL was developed as a series of curriculum-aligned and integrated games, modules, and interactive simulations covering an array of topics in biology. To meet...


Platforms: Mac

A Molecular Biology software that provides tools with an intuitive interface to assists you in DNA cloning, sequence analysis and visualization. Serial Cloner 2.1 handles Features/Annotations and now allows to define, import and export, customized lists of Features. User can annotate any sequence...


Platforms: Mac

Clotho is a comprehensive and reliable software for developing and managing synthetic biological systems. It also provides a mechanism to begin the process of creating standardized data, algorithms, and methodologies for synthetic biology. This tool allows for the development of independent...


Platforms: Windows

BioStat - user-friendly biology and medicine oriented statistical software. With BioStat 2009, one gets a robust suite of statistics tools and graphical analysis methods that are easily accessed though a simple and straightforward interface. While BioStat 2009 is a "heavy-duty" biology and...


Platforms: Windows

The project aims to extend the PHP scripting language to enable PHP developers to write bioinformatics applications more rapidly than if they had to start from scratch using 'vanilla php'.


Platforms: Windows, Mac, Linux

BiOrbit is a small Biological information project -- scripts and other useful stuff for the IT & Biology world.


Platforms: Windows, Mac, Linux

CySBGN adds support to Cytoscape to import, visualize and analyse System Biology Graphical Notation (SBGN) maps.


Platforms: Windows, Mac, Linux

EcoloSim is a Simulation Framework for simple spatial models in biology and ecology, in Java.Typical problems are behavior of a herd of cattle, growth of microbe cells and other populations.


Platforms: Windows, Mac, Linux

A command-line biochemical network compiler for systems biology.


Platforms: Windows, Mac, Linux

Platform for parallel computation in the Amazon cloud, including machine learning ensembles written in R for computational biology and other areas of scientific research. Home to MR-Tandem, a hadoop-enabled fork of X!Tandem peptide search engine.


Platforms: Windows, Mac, Linux

This software is to help the those connected with Biology,Biotechnology,Bio Informatics.The user can select from the choices of proteins, nucleotides,etc(All those found on NCBI's website)and search for the specific results


Platforms: Windows, Mac, BSD, Linux

'Plasmidb' is a database management system (RDMS) used to manipulate, view and store molecular biology information rapidly and easily. Editable information includes: constructed plasmids, clones, standard vectors, primers, antibiotics, enzymes and more


Platforms: Windows, Mac, Linux

The Systems Biology Results Markup Language is a language describing data. Unlike flat data formats, SBRML allows describing the origin of the data as well. This project hosts a library and tools for using SBRML.


Platforms: Windows, Mac, Linux

Create, check, annotate, merge, diff, split SBML (System Biology Markup Lanugage) documents. The latest version of semanticSBML is webbased with a RESTful interface.


Platforms: Windows, Mac, Linux

Java class libraries for structural biology development: includes protein format conversion tool, printf-based text formatting, Pred2ary secondary structure prediction, neural net library, Hooke-Jeeves global optimizer, and misc. math & statistics.


Platforms: Windows, Mac, Linux

This site hosts the source code for C++ version of the Broker for SBW, NOM module, advanced simulation suite, analysis applications and model editors.


Platforms: Windows, Mac, BSD, Linux