Biology

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The Systems Biology Results Markup Language is a language describing data. Unlike flat data formats, SBRML allows describing the origin of the data as well. This project hosts a library and tools for using SBRML.

A protein / macromolecule visualization tool that runs as a screensaver module. It colorfully renders PDB (Protein Data Bank) files using unique algorithms. The module automatically annotates, colors, and rotates structures for an educational and captivating display. Show off your research or...


Platforms: Mac

The Compatible Alternative for Microsoft office (Yozo Office) is an alternative Office suite compatible with both binary (xls, doc, ppt etc.) and XML (xlsx, docx, pptx etc.) file formats with several value added features. Yozo Office is an affordable alternative for Microsoft Office and has been...


Platforms: Windows, Other

Almost any workflow involves computing results, and that's what Mathematica does—from building a hedge fund trading website or publishing interactive engineering textbooks to developing embedded image recognition algorithms or teaching calculus. Mathematica is renowned as the world's ultimate...


Platforms: Windows, Mac, Linux

Clotho is a comprehensive and reliable software for developing and managing synthetic biological systems. It also provides a mechanism to begin the process of creating standardized data, algorithms, and methodologies for synthetic biology. This tool allows for the development of independent...


Platforms: Windows

MGWT: Identification of protein coding regions using the ModifiedGabor-wavelet transform.Sequence of test:F56F11.4.fasta (included into the zip file)http://www.ncbi.nlm.nih.gov/entrez/viewer....de&val=AF099922http://www.vision.ime.usp.br/~jmena/projec...ome_results/F5/References:[1] J. P....


Platforms: Matlab

TinkerCell is a software for synthetic biology. The visual interface allows users to design networks using various biological 'parts'. Models can include modules and multiple cells. Users can program new functions using C or Python. www.tinkercell.


Platforms: Windows, Mac, Linux

SBSI or Systems Biology Software Infrastructure is a handy suite of software tools specially designed for systems biology. It includes parallelized numerical algorithms, and a client application for visualizing results, running simulations, and integrating SBML based plugins. SBSI is a suite of...


Platforms: Windows

The Systems Biology Markup Language (SBML) is an XML-based description language for representing computational models in systems biology. Visit the project web site to learn more.


Platforms: Windows, Mac, Linux

An award winning, integrated on-line learning environment where users experience the world of biology through discovery-based learning. GDL was developed as a series of curriculum-aligned and integrated games, modules, and interactive simulations covering an array of topics in biology. To meet...


Platforms: Mac

This software is to help the those connected with Biology,Biotechnology,Bio Informatics.The user can select from the choices of proteins, nucleotides,etc(All those found on NCBI's website)and search for the specific results


Platforms: Windows, Mac, BSD, Linux

Java class libraries for structural biology development: includes protein format conversion tool, printf-based text formatting, Pred2ary secondary structure prediction, neural net library, Hooke-Jeeves global optimizer, and misc. math & statistics.


Platforms: Windows, Mac, Linux

PHLAWD (pronounced flawd) allows for the creation of large (mega) phylogenies using NCBI databases. There are binaries available for Linux and MacOSX in the downloads section. PHLAWD takes advantage (or at least part of it) of multi threaded computers and can produce matrices of more than 100,000...


Platforms: Mac

The Compatible Alternative for Microsoft office (Yozo Office) is an alternative Office suite compatible with both binary (xls, doc, ppt etc.) and XML (xlsx, docx, pptx etc.) file formats with several value added features. Yozo Office is an affordable alternative for Microsoft Office and has been...


Platforms: Java, Linux, Linux Console, Linux Gnome, Linux GPL, Linux Open Source

R.I.S.E. is a state of the art engine and framework for the simulation and realistic image synthesis of natural phenomenon based on physics, biology and chemistry.


Platforms: Windows, Mac, Linux

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Platforms: Mac

Contributors:Marc Velasco, Tal KrasovskyReference:P. Berens, CircStat: A Matlab Toolbox for Circular Statistics, Journal of Statistical Software, Volume 31, Issue 10, 2009http://www.jstatsoft.org/v31/i10Please cite this paper when the provided code is used. See licensing terms for...


Platforms: Matlab

Wattos is a collection of mostly Java programs for Structural Biology and NMR Spectroscopy. It's programs analyze, annotate, parse, archive, and disseminate experimental NMR data deposited by authors world wide into the PDB and BMRB.


Platforms: Windows, Mac, Linux

GeneticsLab is an excellent utility for those ones who are learning Biology, Genetics or any related studies. GeneticsLab automates some operations based on the genetic code, so you won't need to do them manually anymore! These are some of the operations


Platforms: Mac