Biological Rhythms

BioMail is a small web-based application for medical researchers, biologists, and anyone who wants to know the latest information about a disease or a biological phenomenon. It is written to automate searching for recent scientific papers in the PubMed Medline database.Periodically BioMail does a...

Features a broad array of funky, uncluttered rhythms that work well in rap, hip-hop and cross-genre environments. A solid foundation for building sophisticated hip-hop grooves. Product Details: 39 (39.4mb) grooves for the ultimate Hip Hop experience. For the Techies: Source material was...

BlastViewer provides an interactive graphical user interface for the analysis of the reports produced by the BLAST sequence database search system. BlastViewer is an easy to use software designed for everyday biological sequence analysis relying on BLAST. It allows an easy visualisation and...


Platforms: Mac, Java 1.5 or later

HASAS (HydroAcoustic Signal Analysis System) is a modular system for passive sonar signal analysis. It can be used for biological research or surveillance, for example. The soundcard is used as input device, and it currently includes all the very basic fu


Platforms: *nix, C/C++, BSD

The project is for developing libraries for visualizing biological sequence data on the web. The libraries are written in C and currently use a language (lex/yacc) based front end for presenting features on genomes, contigs, or any type of sequence.


Platforms: Mac, BSD, Linux

BioJava is a tool that includes objects for manipulating biological sequences and file parsers. It also features a DAS client and server support, access to BioSQL and Ensembl databases, tools for making sequence analysis GUIs and powerful analysis and statistical routines including a dynamic...


Platforms: Windows

GMOD is a set of interoperable open source software components for visualizing, annotating, and managing biological data. See http://gmod.org for more.


Platforms: Windows, Mac, Linux

MBAS -- Macro-Biological Analysis System -- provides a set of interoperable tools for aid in the analysis of biological data. The backing database is currently PostgreSQL and the primary language is C, though some data entry tools are written in Java.


Platforms: Windows, Mac, BSD, Linux

MMA (Musical MIDI Accompaniment) is an accompaniment generator. It creates MIDI tracks for a soloist to perform over from a user-supplied file containing chords and MMA directives. Musical MIDI Accompaniment is very versatile and generates excellent tracks. It comes with an extensive...


Platforms: *nix

Get complete picture of your biorhythms by seeing a total of 15 built-in rhythms: Primary, I-Ching, Secondary, and Intuitive Patterns, as well as user-defined rhythms, by visualizing them like never before with 9 fully customizable and interactive views, including: Graph, Table, Calendar,...


Platforms: Windows, Edition 2005,Edition 2005

BiOrbit is a small Biological information project -- scripts and other useful stuff for the IT & Biology world.


Platforms: Windows, Mac, Linux

JAligner is an open source Java implementation of the dynamic programming algorithm Smith-Waterman with Gotoh's improvement for biological local pairwise sequence alignment with the affine gap penalty model.


Platforms: Windows, Mac, Linux

A powerful and user-friendly graphical software designed to conduct large scale exploration of biological sequence databanks and related information (functional, taxonomy, pathways, mutations, etc). KoriBlast can be used for a wide range of applications in genomics and proteomics, such as: full...


Platforms: Mac

A tool to construct the metabolic networks from KEGG, and compare the constructed metabolic networks. Phylogenetic trees can be constructed along the case.


Platforms: Windows, Mac, Linux

Clotho is a comprehensive and reliable software for developing and managing synthetic biological systems. It also provides a mechanism to begin the process of creating standardized data, algorithms, and methodologies for synthetic biology. This tool allows for the development of independent...


Platforms: Windows

IISA - Intelligent Interface to Sequence Analysis is an expert system for biological sequence analysis using Bioperl and Prolog.


Platforms: Windows, Mac, Linux

JFinisher is software for alignment, editing and manipulation of biological sequences. It aims to assist in the finishing of genome assembly. Starting from a reference sequence, the program align contigs using Smith-Waterman local alignment algoritm with auxiliary methods, allowing management of...


Platforms: Mac

OpenCryobank is an attempt to develop a simple, free and open database system for frozen samples inventory in biological laboratories. It is mainly aimed at semen and embryo cryobanks, but it can be used for any kind of biological sample.


Platforms: Windows, Mac, Linux

Record your voice, your fridge, your neighbour's dog or let your computer speak and make loops and rhythms out of the sounds immediately. RealBeat concentrates on simplicity and fast results. No steep learning curve or cluttered screens! Get creative in an instant! RealBeat is a sampler...


Platforms: Mac

A Tool for Retrieval, Visualization and Analysis of biological Pathways. Import a Gene or Protein Set from any Excel file. Automatically find signaling Pathways from KEGG. Integrate your Data in Seconds with a live interactive Force-directed Layout.


Platforms: Windows, Mac