Bioinformatic
GMOD-DBSF is an Application Programming Interface module for the Drupal CMS which simplifies programming bioinformatic Drupal modules. It is responsible for i) importing a subset of the Chado tables to Drupal, ii) creates new tables in Drupal using Chado-conventions; iii) provides functions to...
Platforms: PHP
License: Freeware | Size: 51.2 KB | Download (52): GMOD Drupal Bioinformatic Server Framework Download |
The Bioinformatic Software Bench for Drupal allows for a rapid and secure deployment of bioinformatic software. The BLAST, InterProScan, SSAHA2 and annot8r software are provided by default and plugins for new software can be readily written. An innovative graphical user interface guides both...
Platforms: PHP
License: Freeware | Size: 92.16 KB | Download (44): Bioinformatic Software Bench Download |
FONZIE is a bioinformatic tool written in Python developed for the genetic cartography speciality. FONZIE allow as well to find markers on a set of sequences than to find associate oligonucleotides. http://www.biomedcentral.com/1756-0500/3/322/abstra Features . Requirements: Python, Tandem...
Platforms: *nix
License: Freeware | Size: 20.48 KB | Download (48): FONZIE Download |
A web-based system for upoading, managing, sharing, and analyzing bioinformatic data. The system is primarily written in python, and runs on both linux and MacOs.
Platforms: Mac, Linux
License: Freeware | Size: 1.06 MB | Download (45): CUBioS Download |
D-finder is a bioinformatic search algorithm for the identification of D-sites in JNK interacting proteins. The algorithm is a combination of pattern matching and a hidden markov model (HMM) based on a training set of known JNK D-sites.
Platforms: Windows, Mac, Linux
License: Freeware | Size: 13.53 KB | Download (47): D-finder Download |
Ergatis is a web-based utility that is used to create, run, and monitor reusable computational analysis pipelines. It contains pre-built components for common bioinformatics analysis tasks. These components can be arranged graphically to form highly-configurable pipelines. Each analysis component...
Platforms: *nix
License: Freeware | Size: 4.06 MB | Download (53): ergatis Download |
GAAS (Genome relative Abundance and Average Size) is a bioinformatic tool to calculate accurate community composition and average genome size in metagenomes by using BLAST, advanced parsing of hits and correction of genome length bias.
Platforms: Windows, Mac, Linux
License: Freeware | Size: 155.57 KB | Download (45): GAAS Download |
Grinder is a versatile open-source bioinformatic tool to create simulated omic shotgun and amplicon sequence libraries for all main sequencing platforms.
Platforms: Windows, Mac, Linux
License: Freeware | Size: 157.84 KB | Download (45): Grinder Download |
Open2Dprot is an open-source proteomics project for the development of bioinformatic tools for n-dimensional protein expression data analysis of quantified protein expression across multiple samples from research experiments.
Platforms: Windows, Mac, Linux
License: Freeware | Size: 7.52 MB | Download (45): Open2Dprot Download |
Genes4all is a package of modules for visualizing bioinformatic information using GMOD, BioPerl and Chado. It depends on the gmod_dbsf module (http://drupal.org/project/gmod_dbsf) and is in active development. See also http://drupal.org/project/biosoftware_bench.Currently two (sub)modules are...
Platforms: PHP
License: Freeware | Size: 51.2 KB | Download (39): Genes4all Download |
Bio::SAGE::Comparison module compares data from serial analysis of gene expression (SAGE) libraries. SYNOPSIS use Bio::SAGE::Comparison; $sage = Bio::SAGE::Comparison->new(); This module provides several tools for comparing data generated from serial analysis of gene expression (SAGE)...
Platforms: *nix
License: Freeware | Size: 8.19 KB | Download (110): Bio::SAGE::Comparison Download |
Bio::SAGE::DataProcessing module processes raw serial analysis of gene expression (SAGE) data. SYNOPSIS use Bio::SAGE::DataProcessing; $sage = Bio::SAGE::DataProcessing->new(); # open sequence and quality files open( READS, "library.fasta" ); open( QUAL, "library.qual.fasta" ); #...
Platforms: *nix
License: Freeware | Size: 19.46 KB | Download (93): Bio::SAGE::DataProcessing Download |
MoneyIsMoney is a currency converter with a calculator and internet connection. Features include:Single or Multiple currency conversion Formats the money amounts. Provides a calculator Manages taxes. Updates automaticaly the currency rates using Internet servers.
Platforms: Mac
License: Shareware | Cost: $0.00 USD | Size: 609 KB | Download (95): MoneyIsMoney Download |
Biopython is a set of freely available tools for biological computation written in Python by an international team of developers.
It is a distributed collaborative effort to develop Python libraries and applications which address the needs of current and future work in bioinformatics. The...
Platforms: Windows
License: Freeware | Size: 1.43 MB | Download (504): Biopython for Windows (x32 bit) Download |
Biopython is a set of freely available tools for biological computation written in Python by an international team of developers.
It is a distributed collaborative effort to develop Python libraries and applications which address the needs of current and future work in bioinformatics. The...
Platforms: Mac
License: Freeware | Size: 7.85 MB | Download (523): Biopython for Mac OS X Download |
BABA stands for Basic-Algorithms-of-Bioinformatics Applet. This project aims to create a set of bioinformatic algorithms presented didactically. The algorithms available at the moment are: Needleman&Wunsch, Smith&Waterman, Four Russians and Nussinov.
Platforms: Windows, Mac, Linux
License: Freeware | Size: 67.92 KB | Download (46): baba Download |
BlastViewer provides an interactive graphical user interface for the analysis of the reports produced by the BLAST sequence database search system. BlastViewer is an easy to use software designed for everyday biological sequence analysis relying on BLAST. It allows an easy visualisation and...
Platforms: Mac, Java 1.5 or later
License: Freeware | Size: 7.5 MB | Download (65): BlastViewer Download |
When a large number of samples is analyzed by mass spectrometry instrument, a common issue is the multiple spectra peaks alignment. In fact, the statistical analysis generally requires a data matrix, easily to import from a file to the software. Furthermore, in a multiple mass spectrometry...
Platforms: Matlab
License: Shareware | Cost: $0.00 USD | Size: 30.72 KB | Download (39): Multiple Peaks Alignment for Mass Spectrometry Download |
Open2Dprot is an open-source proteomics project for the development of bioinformatic tools for n-dimensional protein expression data analysis of quantified protein expression across multiple samples from research experiments.
Platforms: *nix
License: Freeware | Size: 7.51 MB | Download (43): Open2Dprot For Linux Download |