Amino Acids Side Effects

Bio2Midi converts the text of a DNA or protein sequence to a MIDI file, which you may immediately audition, or import into any MIDI sequencer for further compositional processing. Choose to listen to the sequences as 4-note DNA bases, or as 20-note protein amino acids, or both at once. You can... Platforms: Windows

Simple Backup is a shell script to create basic backups using tar, grep, sed, and bash. Simple Backup works by using a file that contains the folders to be backed up and a file that contains expressions to exclude certain folders/files. Usage: backup.sh < backuplist > < excludelist > Free... Platforms: *nix

Using a standard Windows PC, Multi Server Simulator can simulate large, virtual HTTP, FTP, SMTP, or DNS server networks, as well as SNMP-based network switches. The number of servers and virtual switches that can be created is limited only by the available IP addresses and TCP ports (as well as... Platforms: Windows

Benchmark::Forking is a Perl module to run benchmarks in separate processes. SYNOPSIS use Benchmark::Forking qw( timethis timethese cmpthese ); timethis ($count, "code"); timethese($count, { Name1 => sub { ...code1... }, Name2 => sub { ...code2... }, }); cmpthese($count, { Name1 =>... Platforms: *nix

JikesTM is a compiler that translates JavaTM source files as defined in The Java Language Specification into the bytecoded instruction set and binary format defined in The Java Virtual Machine Specification. You may wonder why the world needs another Java compiler, considering that Sun provides... Platforms: *nix

Kelbt project can generate backtracking LALR parsers. Standard LALR parser generators emit an error upon encountering a conflict in the parse tables. Kelbt forges onward, generating parsers which handle conflicts by backtracking at runtime. Kelbt is able to generate a parser for any context-free... Platforms: *nix

dbxbandmin collects traffic via ipchains/iptables/ipfwadm-rules and writes the data into an Interbase database. It uses Perls DBI-driver and can be extended with support for various database versions. - You need a kernel with firewall-support - you need ipfwadm or ipchains or iptables - you... Platforms: *nix

Test::Unit::TestCase is a unit testing framework base class. SYNOPSIS package FooBar; use base qw(Test::Unit::TestCase); sub new { my $self = shift()->SUPER::new(@_); # your state for fixture here return $self; } sub set_up { # provide fixture } sub tear_down { # clean up after... Platforms: *nix

Scheme2Js is a Scheme to Javascript compiler. While some effort has been spent on being as close as possible to R5rs, we concentrated mainly on efficiency. Usually Scheme2Js produces Javascript code, that is comparable to hand-written code. In order to achieve this performance, Scheme2Js is not... Platforms: *nix

Bio::Tools::CodonTable is a bioperl codon table object. SYNOPSIS # This is a read-only class for all known codon tables. The IDs are # the ones used by nucleotide sequence databases. All common IUPAC # ambiguity codes for DNA, RNA and animo acids are recognized. # to use use... Platforms: *nix

Jikes RVM is a compiler that translates JavaTM source files as defined in The Java Language Specification into the bytecoded instruction set and binary format defined in The Java Virtual Machine Specification. You may wonder why the world needs another Java compiler, considering that Sun... Platforms: *nix

MassSpec::ViewSpectrum::RealVsHypPeptide is a Perl module to view a real mass spectrum on the same graph as a hypothetical spectrum generated by fragmenting a peptide in silico. SYNOPSIS use MassSpec::ViewSpectrum::RealVsHypPeptide; open GRAPHIC, ">mygraphic.png" or die "Unable to open... Platforms: *nix

Bio::Graphics::Glyph::cds module contains the "cds" glyph. SYNOPSIS See L< Bio::Graphics::Panel > and L< Bio::Graphics::Glyph >. This glyph draws features that are associated with a protein coding region. At high magnifications, draws a series of boxes that are color-coded to indicate the... Platforms: *nix

Fishkill is a minimalist functional programming language. Some might call it a toy language. The project is based entirely on pattern matching of function arguments. There are no data types (or you might say there is a single data type). Instead, arbitrary constructors can be defined by just... Platforms: *nix

Geolizer is a patch for Webalizer that uses the GeoIP library to generate faster and more reliable geographic statistics than the default DNS suffix method. It is recommended that DNS reversal be disabled on your HTTP server for improved performance and more accurate statistics. It can be... Platforms: *nix

Ccide reads C, C++, BASIC, or bash source code containing embedded decision tables from stdin, expands the tables, copies the remaining statements, and forms a compilable C or C++ source module, executable bash script, or interpretable BASIC program. Erratic side effects are avoided by... Platforms: *nix

Whitebeam provides a rapid, XML based development environment for structured, dynamic Web apps. Whitebeam is a frontend XML-centered rapid design environment which makes use of HTML/XML and JavaScript. It integrates two popular and robust Open Source platforms (Apache and Mozillas SpiderMonkey... Platforms: *nix

UPC LiveCD is a UPC-enabled Linux operating system on a CD-ROM disc. It runs directly from the CD without installing. I created it to demonstrate UPC programming on the SC2005 conference. With UPC LiveCD, you can try out UPC programming without the need of a multiprocessor environment. UPC... Platforms: *nix

Grackle Probe accelerates Grackle based Macs that are using the Quartz Extreme PCI hack that's been mentioned recently. Grackle Probe could accelerate Grackle based Macs that have high-performance PCI cards, without needing to use the Quartz Extreme PCI hack or any undesirable side effects that... Platforms: Mac

PhotoZoom Pro (formerly known as S-Spline Pro) is based on S-Spline XL, a renewed and improved version of our patented self-adjusting, many times awarded S-Spline interpolation technology. As we did with S-Spline, our S-Spline XL technology again introduces a revolutionary breakthrough in digital... Platforms: Mac