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Bio::Network::IO::dip_tab 1.5.2_100

  Date Added: August 01, 2010  |  Visits: 701

Bio::Network::IO::dip_tab

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Bio::Network::IO::dip_tab is a Perl class for parsing interaction data in DIP tab-delimited format. SYNOPSIS Do not use this module directly, use Bio::Network::IO. For example: my $io = Bio::Network::IO->new(-format => dip_tab, -file => data.dip); my $network = $io->next_network; The Database of Interacting Proteins (DIP) is a protein interaction database (see http://dip.doe-mbi.ucla.edu/dip/Main.cgi). The species-specific subsets of the DIP database are provided in a simple, tab-delimited format. The tab-separated columns are: edge DIP id node A DIP id node A optional id node A SwissProt id node A PIR id node A GenBank GI id node B DIP id node B optional id node B SwissProt id node B PIR id node B GenBank GI id The source or namespace of the optional id in columns 3 and 8 varies from species to species, and optional ids are frequently absent..

Requirements: No special requirements
Platforms: Linux
Keyword: Bionetworkiodiptab Id Interaction Libraries Node Node B Programming Tab Tab-delimited
Users rating: 0/10

License: Freeware Size: 99.33 KB
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