Download Shareware and Freeware Software for Windows, Linux, Macintosh, PDA

line Home  |  About Us  |  Link To Us  |  FAQ  |  Contact

Serving Software Downloads in 976 Categories, Downloaded 30.068.707 Times

Bio::Graphics::FeatureFile 1.4

  Date Added: October 26, 2010  |  Visits: 719

Bio::Graphics::FeatureFile

Report Broken Link
Printer Friendly Version


Product Homepage
Download (71 downloads)

Bio::Graphics::FeatureFile is a set of Bio::Graphics features, stored in a file. SYNOPSIS use Bio::Graphics::FeatureFile; my $data = Bio::Graphics::FeatureFile->new(-file => features.txt); # create a new panel and render contents of the file onto it my $panel = $data->new_panel; my $tracks_rendered = $data->render($panel); # or do it all in one step my ($tracks_rendered,$panel) = $data->render; # for more control, render tracks individually my @feature_types = $data->types; for my $type (@feature_types) { my $features = $data->features($type); my %options = $data->style($type); $panel->add_track($features,%options); # assuming we have a Bio::Graphics::Panel } # get individual settings my $est_fg_color = $data->setting(EST => fgcolor); # or create the FeatureFile by hand # add a type $data->add_type(EST => {fgcolor=>blue,height=>12}); # add a feature my $feature = Bio::Graphics::Feature->new( # params ); # or some other SeqI $data->add_feature($feature=>EST); The Bio::Graphics::FeatureFile module reads and parses files that describe sequence features and their renderings. It accepts both GFF format and a more human-friendly file format described below. Once a FeatureFile object has been initialized, you can interrogate it for its consistuent features and their settings, or render the entire file onto a Bio::Graphics::Panel. This moduel is a precursor of Jason Stajichs Bio::Annotation::Collection class, and fulfills a similar function of storing a collection of sequence features. However, it also stores rendering information about the features, and does not currently follow the CollectionI interface..

Requirements: No special requirements
Platforms: Linux
Keyword: Biographicsfeaturefile Est Feature Featurefile Features Libraries Panel Programming Render Stored Type
Users rating: 0/10

License: Freeware Size: 4.7 MB
BIO::GRAPHICS::FEATUREFILE RELATED
Libraries  -  Bio::DB::GFF::Feature 1.4
Bio::DB::GFF::Feature is a relative segment identified by a feature type. Bio::DB::GFF::Feature is a stretch of sequence that corresponding to a single annotation in a GFF database. It inherits from Bio::DB::GFF::RelSegment, and so has all the...
4.7 MB  
Code Management Tools  -  jMax 4.1.0
jMax project is a visual programming environment for building interactive real-time multimedia and musical applications. Installation: The simplest way to compile this package is: 1. `cd to the directory containing the packages source code...
2.7 MB  
Business  -  JAVA form and report builder - JRPT 1.0
JRPT is a library of JAVA objects and generic JSP files which enables the report creation offering many features at no programming cost. The package contains doc with examples of reports and their implementation in JRPT.
99.34 KB  
Programming  -  PHPGEN 1.0
PHPGEN is a php code generator, which can help you to build a MySQL driven system with the feature of add, edit, drop, list records stored in MySQL. It's features: use smarty as template generate well orginagized code all can be don in browser.
2.26 MB  
Games  -  Black Jack Strategy 0.2
Added menu bar with File, Hands, and Help menus Moved the About button to the Help menu Added and Exit option in the File menu Added a feature to allow the user to select the type of hand they would like to work with. All,...
734 B  
Business  -  Epson TM Bluetooth Print 1.0.1
This app enables you to print text, barcode and graphics directly from iPhone, iPad and iPod touch to a Epson TM printer with Bluetooth interface for iOS. Features -Print any text. -Print various type of barcode. -Print image from...
614.4 KB  
Games  -  TouchButterfly 1.0
Touch beautiful flying butterflies before they get away and earn points. Main features are, * Beautiful butterflies of different type and different color. * Flying honey bees also. * Total game size is bellow 5 MB. * Good game to...
4.7 MB  
Productivity  -  Fuel Prices India 1.0.0.0
Get the latest fuel prices for your city/state in India. Petrol and diesel prices for state capitals, metros and major cities throughout India are listed. The search feature instantly narrows down the list, as you type, to display the...
1024 KB  
Libraries  -  Bio::Graphics::Feature 1.4
Bio::Graphics::Feature is a simple feature object for use with Bio::Graphics::Panel. SYNOPSIS use Bio::Graphics::Feature; # create a simple feature with no internal structure $f = Bio::Graphics::Feature->new(-start => 1000, -stop => 2000,...
4.7 MB  
Libraries  -  Lingua::Phonology::Segment 0.32
Lingua::Phonology::Segment is a module to represent a segment as a bundle of feature values. SYNOPSIS use Lingua::Phonology; $phono = new Lingua::Phonology; # Define a feature set $features = $phono->features; $features->loadfile; #...
100.35 KB  
NEW DOWNLOADS IN PROGRAMMING, LIBRARIES
Programming  -  FLEX-db Digital Asset Manager 3.0.9
FLEX-db - an enterprise Digital Asset Manager (DAM). It ingests and links metadata with files, creates thumbnails, and processes files using business rules. FLEX-db has a JSP client, Java app server for file input and output and an EJB metadata...
21.57 MB  
Programming  -  Libicom 0.9.0
The libicom library is a character based dynamicly linked library for Linux. It is used to remotely control the Icom IC-R8500 wide band receiver via an RS232 link. All call and return parameters to the control functions are character string based....
20.48 KB  
Programming  -  dotdesktop 0.3
Dotdesktop library provides ability to parse desktop entry file and access the information in a convenient way. Desktop entry file format is defined by freedesktop.org, it is used to describe information about an application such as the name and...
327.68 KB  
Programming  -  Cedalion for Linux 0.2.6
Cedalion is a programming language that allows its users to add new abstractions and define (and use) internal DSLs. Its innovation is in the fact that it uses projectional editing to allow the new abstractions to have no syntactic limitations.
471.04 KB  
Programming  -  libyasl 0.2
Libyasl is a C++ class library to easily realize TCP/UDP/Multicast clientsand servers in IPv4 and IPv6 environments under GNU/Linux systems.
143.36 KB  
Libraries  -  wolfSSL 3.12.0
The wolfSSL embedded SSL/TLS library is a lightweight SSL library written in ANSI standard C and targeted for embedded and RTOS environments - primarily because of its small size, speed, and feature set. It is commonly used in standard operating...
2.73 MB  
Libraries  -  EuGTK 4.8.9
Makes it easy to develop good- looking, fast, cross-platform programs that run on Linux, OS X, and Windows. Euphoria is a very fast interpreted/compiled language with straight-forward syntax. EuGTK allows programming in a clean, object-oriented...
10.68 MB  
Libraries  -  Linux User Group Library Manager 1.0
The LUG Library Manager is a project to help Linux User Groups start their own library. A LUG library is helpful to the community at large because it increases access to information, and gives everyone the opportunity to become more knowledgeable.
5.35 KB  
Libraries  -  Module::MakefilePL::Parse 0.12
Module::MakefilePL::Parse is a Perl module to parse required modules from Makefile.PL. SYNOPSIS use Module::MakefilePL::Parse; open $fh, Makefile.PL; $parser = Module::MakefilePL::Parse->new( join("", ) ); $info = $parser->required;...
8.19 KB  
Libraries  -  sqlpp 0.06
sqlpp Perl package is a SQL preprocessor. sqlpp is a conventional cpp-alike preprocessor taught to understand SQL ( PgSQL, in particular) syntax specificities. In addition to the standard #define/#ifdef/#else/#endif cohort, provides also...
10.24 KB