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Bio::Graphics::Feature 1.4

  Date Added: April 24, 2010  |  Visits: 828

Bio::Graphics::Feature

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Bio::Graphics::Feature is a simple feature object for use with Bio::Graphics::Panel. SYNOPSIS use Bio::Graphics::Feature; # create a simple feature with no internal structure $f = Bio::Graphics::Feature->new(-start => 1000, -stop => 2000, -type => transcript, -name => alpha-1 antitrypsin, -desc => an enzyme inhibitor, ); # create a feature composed of multiple segments, all of type "similarity" $f = Bio::Graphics::Feature->new(-segments => [[1000,1100],[1500,1550],[1800,2000]], -name => ABC-3, -type => gapped_alignment, -subtype => similarity); # build up a gene exon by exon $e1 = Bio::Graphics::Feature->new(-start=>1,-stop=>100,-type=>exon); $e2 = Bio::Graphics::Feature->new(-start=>150,-stop=>200,-type=>exon); $e3 = Bio::Graphics::Feature->new(-start=>300,-stop=>500,-type=>exon); $f = Bio::Graphics::Feature->new(-segments=>[$e1,$e2,$e3],-type=>gene); This is a simple Bio::SeqFeatureI-compliant object that is compatible with Bio::Graphics::Panel. With it you can create lightweight feature objects for drawing..

Requirements: No special requirements
Platforms: Linux
Keyword: Biographicsfeature Exon Feature Libraries New Object Programming Simple
Users rating: 0/10

License: Freeware Size: 4.7 MB
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