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Bio::LiveSeq::Translation 1.4

  Date Added: November 02, 2010  |  Visits: 878

Bio::LiveSeq::Translation

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Bio::LiveSeq::Translation is a translation class for LiveSeq. This stores informations about aminoacids translations of transcripts. The implementation is that a Translation object is the translation of a Transcript object, with different possibilities of manipulation, different coordinate system and eventually its own ranges (protein domains). APPENDIX The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _ new Title : new Usage : $protein = Bio::LiveSeq::Translation->new(-transcript => $transcr); Function: generates a new Bio::LiveSeq::Translation Returns : reference to a new object of class Translation Errorcode -1 Args : reference to an object of class Transcript get_Transcript Title : valid Usage : $transcript = $obj->get_Transcript() Function: retrieves the reference to the object of class Transcript (if any) attached to a LiveSeq object Returns : object reference Args : none aa_ranges Title : aa_ranges Usage : @proteinfeatures = $translation->aa_ranges() Function: to retrieve all the LiveSeq AARange objects attached to a Translation, usually created out of a SwissProt database entry crossreferenced from an EMBL CDS feature. Returns : an array Args : none.

Requirements: No special requirements
Platforms: Linux
Keyword: Bioliveseqtranslation Class Libraries Liveseq New Object Programming Ranges Transcript Translation
Users rating: 0/10

License: Freeware Size: 4.7 MB
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