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GO::Model::Term 0.04

  Date Added: August 12, 2010  |  Visits: 835

GO::Model::Term

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GO::Model::Term is a term or concept in an ontology. SYNOPSIS # From a file use GO::Parser; my $parser = new GO::Parser({handler=>obj}); # create parser object $parser->parse("gene_ontology.obo"); # parse file -> objects my $graph = $parser->handler->graph; # get L object my $term = $graph->get_term("GO:0001303"); # fetch a term by ID printf "Term %s %sn", $term->name, $term->acc; # From a GO Database (requires go-db-perl) my apph = GO::AppHandle->connect(-dbname=>$dbname); my $term = $apph->get_term({acc=>00003677}); printf "Term:%s (%s)nDefinition:%snSynonyms:%sn", $term->name, $term->public_acc, $term->definition, join(", ", @{$term->synonym_list}); Represents an Ontology term; the same class is used for process, compartment and function currently, a Term is not aware of its Relationships; to find out how a term is related to other terms, use the a GO::Model::Graph object, which will give you the GO::Model::Relationship objects; for example $rels = $graph->get_parent_relationships($term->acc);.

Requirements: No special requirements
Platforms: Linux
Keyword: Concept Go Gomodelterm Libraries Programming Term
Users rating: 0/10

License: Freeware Size: 593.92 KB
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