Download Shareware and Freeware Software for Windows, Linux, Macintosh, PDA

line Home  |  About Us  |  Link To Us  |  FAQ  |  Contact

Serving Software Downloads in 976 Categories, Downloaded 29.548.087 Times

GO::Model::Term 0.04

  Date Added: August 12, 2010  |  Visits: 776

GO::Model::Term

Report Broken Link
Printer Friendly Version


Product Homepage
Download (79 downloads)



GO::Model::Term is a term or concept in an ontology. SYNOPSIS # From a file use GO::Parser; my $parser = new GO::Parser({handler=>obj}); # create parser object $parser->parse("gene_ontology.obo"); # parse file -> objects my $graph = $parser->handler->graph; # get L object my $term = $graph->get_term("GO:0001303"); # fetch a term by ID printf "Term %s %sn", $term->name, $term->acc; # From a GO Database (requires go-db-perl) my apph = GO::AppHandle->connect(-dbname=>$dbname); my $term = $apph->get_term({acc=>00003677}); printf "Term:%s (%s)nDefinition:%snSynonyms:%sn", $term->name, $term->public_acc, $term->definition, join(", ", @{$term->synonym_list}); Represents an Ontology term; the same class is used for process, compartment and function currently, a Term is not aware of its Relationships; to find out how a term is related to other terms, use the a GO::Model::Graph object, which will give you the GO::Model::Relationship objects; for example $rels = $graph->get_parent_relationships($term->acc);.

Requirements: No special requirements
Platforms: Linux
Keyword: Concept Go Gomodelterm Libraries Programming Term
Users rating: 0/10

License: Freeware Size: 593.92 KB
USER REVIEWS
More Reviews or Write Review


GO::MODEL::TERM RELATED
Entertainment  -  KWHI Radio 5.92
Download this app to take KWHI 1280 with you wherever you go. KWHI's programming is dominated by locally produced news, sports and information programs for Brenham, Washington County and the surrounding area. The news staff produces three major...
12.7 MB  
Libraries  -  Term::ANSIMenu 0.02
Term::ANSIMenu is an infrastructure for creating menus in ANSI capable terminals. SYNOPSIS use Term::ANSIMenu; my $menu = Term::ANSIMenu->new( width => 40, help => [[, &standard_help], [hint 1, &help_item], [ undef, &standard_help],...
20.48 KB  
Libraries  -  Term::VT102 0.82
Term::VT102 is a class to emulate a DEC VT102 terminal. SYNOPSIS use Term::VT102; my $vt = Term::VT102->new (cols => 80, rows => 24); while ( ) { $vt->process ($_); } The VT102 class provides emulation of most of the functions of a DEC...
24.58 KB  
Libraries  -  Term::ANSIScreen 1.42
Term::ANSIScreen is a Perl module for terminal control using ANSI escape sequences. SYNOPSIS # qw/:color/ is exported by default, i.e. color() & colored() use Term::ANSIScreen qw/:color :cursor :screen :keyboard/; print setmode(1),...
15.36 KB  
Libraries  -  Bio::Ontology::GOterm 1.4
Bio::Ontology::GOterm is a representation of GO terms. SYNOPSIS $term = Bio::Ontology::GOterm->new ( -go_id => "GO:0016847", -name => "1-aminocyclopropane-1-carboxylate synthase", -definition => "Catalysis of ...", -is_obsolete => 0,...
4.7 MB  
Libraries  -  GO::TermFinder 0.7
GO::TermFinder is a Perl module that can identify GO nodes that annotate a group of genes with a significant p-value. This package is intended to provide a method whereby the P-values of a set of GO annotations can be determined for a set of...
860.16 KB  
Libraries  -  GODI 20060118
GODI library provides an advanced programming environment for the Objective Caml (OCaml) language. From INRIA (who created OCaml) you can get the OCaml compiler and runtime system, but this is usually not enough to develop applications. You also...
1.5 MB  
Libraries  -  GNU Classpath 0.95
GNU Classpath (essential libraries for Java) is a project to create free core class libraries for use with virtual machines and compilers for the Java programming language. GNU Classpath project includes all native methods and core classes...
6.5 MB  
Libraries  -  Term::ReadLine::Gnu 1.16
Term::ReadLine::Gnu is a Perl extension for the GNU Readline/History Library. SYNOPSIS use Term::ReadLine; $term = new Term::ReadLine ProgramName; while ( defined ($_ = $term->readline(prompt>)) ) { ... } This is an implementation of...
66.56 KB  
Libraries  -  Term::GnuplotTerminals 0.90380905
Term::GnuplotTerminals is a Perl documentation of gnuplot output devices. aed767 The aed512 and aed767 terminal drivers support AED graphics terminals. The two drivers differ only in their horizontal ranges, which are 512 and 768 pixels,...
716.8 KB  
NEW DOWNLOADS IN PROGRAMMING, LIBRARIES
Programming  -  FLEX-db Digital Asset Manager 3.0.9
FLEX-db - an enterprise Digital Asset Manager (DAM). It ingests and links metadata with files, creates thumbnails, and processes files using business rules. FLEX-db has a JSP client, Java app server for file input and output and an EJB metadata...
21.57 MB  
Programming  -  Libicom 0.9.0
The libicom library is a character based dynamicly linked library for Linux. It is used to remotely control the Icom IC-R8500 wide band receiver via an RS232 link. All call and return parameters to the control functions are character string based....
20.48 KB  
Programming  -  dotdesktop 0.3
Dotdesktop library provides ability to parse desktop entry file and access the information in a convenient way. Desktop entry file format is defined by freedesktop.org, it is used to describe information about an application such as the name and...
327.68 KB  
Programming  -  Cedalion for Linux 0.2.6
Cedalion is a programming language that allows its users to add new abstractions and define (and use) internal DSLs. Its innovation is in the fact that it uses projectional editing to allow the new abstractions to have no syntactic limitations.
471.04 KB  
Programming  -  libyasl 0.2
Libyasl is a C++ class library to easily realize TCP/UDP/Multicast clientsand servers in IPv4 and IPv6 environments under GNU/Linux systems.
143.36 KB  
Libraries  -  EuGTK 4.8.9
Makes it easy to develop good- looking, fast, cross-platform programs that run on Linux, OS X, and Windows. Euphoria is a very fast interpreted/compiled language with straight-forward syntax. EuGTK allows programming in a clean, object-oriented...
10.68 MB  
Libraries  -  Linux User Group Library Manager 1.0
The LUG Library Manager is a project to help Linux User Groups start their own library. A LUG library is helpful to the community at large because it increases access to information, and gives everyone the opportunity to become more knowledgeable.
5.35 KB  
Libraries  -  Module::MakefilePL::Parse 0.12
Module::MakefilePL::Parse is a Perl module to parse required modules from Makefile.PL. SYNOPSIS use Module::MakefilePL::Parse; open $fh, Makefile.PL; $parser = Module::MakefilePL::Parse->new( join("", ) ); $info = $parser->required;...
8.19 KB  
Libraries  -  sqlpp 0.06
sqlpp Perl package is a SQL preprocessor. sqlpp is a conventional cpp-alike preprocessor taught to understand SQL ( PgSQL, in particular) syntax specificities. In addition to the standard #define/#ifdef/#else/#endif cohort, provides also...
10.24 KB  
Libraries  -  App::SimpleScan::Substitution::Line 2.02
App::SimpleScan::Substitution::Line is a line with optional fixed variable values. SYNOPSIS my $line = App::SimpleScan::Substitution::Line->new(" this "); # Use only this value when substituting " ". $line->fix(substituite =>...
54.27 KB