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Bio::Tools::Run::PiseApplication::align2model 1.4

  Date Added: August 02, 2010  |  Visits: 1.796

Bio::Tools::Run::PiseApplication::align2model

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Bio::Tools::Run::PiseApplication::align2model is a Bioperl class for align2model - create a multiple alignment of sequences to an existing model. Parameters: align2model (String) run (String) Run name db (Sequence) Sequences to align (-db) model_file (InFile) Model (-i) pipe: sam_model id (String) Sequence identifier(s) selection (separated by commas) (-id) nscoreseq (Integer) Maximum number of sequences to be read (-nscoreseq) adpstyle (Excl) Dynamic programming style (-adpstyle SW (Excl) Sequence scoring (-SW) auto_fim (Switch) Add FIMs automatically (-auto_fim) jump_in_prob (Float) Probability cost of jumping into the center of the model (-jump_in_prob) jump_out_prob (Float) Probability cost of jumping out the center of the model (-jump_out_prob) a2mdots (Switch) Print dots to fill space need for other sequences insertions (-a2mdots) dump_parameters (Excl) (-dump_parameters).

Requirements: No special requirements
Platforms: Linux
Keyword: Alignment Create Create A Libraries Model Multiple Multiple Alignment Piseapplication Prob Programming Sequences
Users rating: 0/10

License: Freeware Size: 829.44 KB
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