Download Shareware and Freeware Software for Windows, Linux, Macintosh, PDA

line Home  |  About Us  |  Link To Us  |  FAQ  |  Contact

Serving Software Downloads in 976 Categories, Downloaded 29.547.230 Times

Bio::Tools::Run::PiseApplication::align2model 1.4

  Date Added: August 02, 2010  |  Visits: 1.210

Bio::Tools::Run::PiseApplication::align2model

Report Broken Link
Printer Friendly Version


Product Homepage
Download (75 downloads)



Bio::Tools::Run::PiseApplication::align2model is a Bioperl class for align2model - create a multiple alignment of sequences to an existing model. Parameters: align2model (String) run (String) Run name db (Sequence) Sequences to align (-db) model_file (InFile) Model (-i) pipe: sam_model id (String) Sequence identifier(s) selection (separated by commas) (-id) nscoreseq (Integer) Maximum number of sequences to be read (-nscoreseq) adpstyle (Excl) Dynamic programming style (-adpstyle SW (Excl) Sequence scoring (-SW) auto_fim (Switch) Add FIMs automatically (-auto_fim) jump_in_prob (Float) Probability cost of jumping into the center of the model (-jump_in_prob) jump_out_prob (Float) Probability cost of jumping out the center of the model (-jump_out_prob) a2mdots (Switch) Print dots to fill space need for other sequences insertions (-a2mdots) dump_parameters (Excl) (-dump_parameters).

Requirements: No special requirements
Platforms: Linux
Keyword: Alignment Create Create A Libraries Model Multiple Multiple Alignment Piseapplication Prob Programming Sequences
Users rating: 0/10

License: Freeware Size: 829.44 KB
USER REVIEWS
More Reviews or Write Review


BIO::TOOLS::RUN::PISEAPPLICATION::ALIGN2MODEL RELATED
Multimedia & Graphics  -  UGENE 1.9.0
UGENE is a comprehensive genome analysis suite that features multiple sequence alignment and a complex HMM builder and search module. for WindowsAll
 
Business  -  FSA For Linux 1.15.6
FSA is a probabilistic multiple sequence alignment algorithm which uses a "distance-based" approach to aligning homologous protein, RNA or DNA sequences.
9.61 MB  
Programming  -  MISFITS 1.0
MISFITS is a program to evaluate the goodness of fit of a model to an alignment in phylogeny reconstruction. It offers a look back at the alignment to pinpoint to site patterns that do not fit to the model and the resulting tree (thereafter...
225.28 KB  
Education  -  Heating and Cooling a Cylinder Model 1.0
The Heating and Cooling a Cylinder model computes the radial temperature distribution within a long cylinder as it is heated and cooled by a surrounding fluid. The cylinder is broken into shells and the temperature of each shell is computed using...
10.24 KB  
Education  -  Standing Waves in a Pipe Model 1.0
The Ejs Standing Waves in a Pipe model displays the displacement and pressure waves for a standing wave in a pipe. The pipe can be closed on both ends, on one end, or open on both ends. The number of nodes in the standing waves can be changed via...
1.41 MB  
Education  -  Standing Waves on a String Model 1.0
The Ejs Standing Waves on a String model displays the motion of a standing wave on a string. The standing wave can be augmented by adding the zero line and the maximum displacement of the string. The number of standing waves shown can be changed...
1.39 MB  
Science  -  Falling Rod Leaning on a Wall Model 1.0
The Ejs Falling Rod Leaning on a Wall model displays the dynamics of a falling rod that is initially leaning against a vertical wall. The rod is dropped from rest while its end points are in contact with a vertical wall and a horizontal table....
1.35 MB  
Libraries  -  Tiny Marbles 1.0 Final
Tiny Marbles provides persistence for dynamic objects, through a data model that you can create, modify and extend at runtime. It is useful for developers who need to create rapid prototypes with an unknown model and developers of applications...
8.5 MB  
Modules  -  Multiple Categories per product quick entry 1.3
Now on the page where you create/update products you will have multiple select box, and you can select multiple categories for product. Quick and easy.
 
Libraries  -  Multiple-Precision Floating-Point Library 2.2.0
The MPFR library is a C library for multiple-precision floating-point computations with exact rounding (also called correct rounding). It is based on the GMP multiple-precision library. The main goal of MPFR is to provide a library for...
942.08 KB  
NEW DOWNLOADS IN PROGRAMMING, LIBRARIES
Programming  -  FLEX-db Digital Asset Manager 3.0.9
FLEX-db - an enterprise Digital Asset Manager (DAM). It ingests and links metadata with files, creates thumbnails, and processes files using business rules. FLEX-db has a JSP client, Java app server for file input and output and an EJB metadata...
21.57 MB  
Programming  -  Libicom 0.9.0
The libicom library is a character based dynamicly linked library for Linux. It is used to remotely control the Icom IC-R8500 wide band receiver via an RS232 link. All call and return parameters to the control functions are character string based....
20.48 KB  
Programming  -  dotdesktop 0.3
Dotdesktop library provides ability to parse desktop entry file and access the information in a convenient way. Desktop entry file format is defined by freedesktop.org, it is used to describe information about an application such as the name and...
327.68 KB  
Programming  -  Cedalion for Linux 0.2.6
Cedalion is a programming language that allows its users to add new abstractions and define (and use) internal DSLs. Its innovation is in the fact that it uses projectional editing to allow the new abstractions to have no syntactic limitations.
471.04 KB  
Programming  -  libyasl 0.2
Libyasl is a C++ class library to easily realize TCP/UDP/Multicast clientsand servers in IPv4 and IPv6 environments under GNU/Linux systems.
143.36 KB  
Libraries  -  EuGTK 4.8.9
Makes it easy to develop good- looking, fast, cross-platform programs that run on Linux, OS X, and Windows. Euphoria is a very fast interpreted/compiled language with straight-forward syntax. EuGTK allows programming in a clean, object-oriented...
10.68 MB  
Libraries  -  Linux User Group Library Manager 1.0
The LUG Library Manager is a project to help Linux User Groups start their own library. A LUG library is helpful to the community at large because it increases access to information, and gives everyone the opportunity to become more knowledgeable.
5.35 KB  
Libraries  -  Module::MakefilePL::Parse 0.12
Module::MakefilePL::Parse is a Perl module to parse required modules from Makefile.PL. SYNOPSIS use Module::MakefilePL::Parse; open $fh, Makefile.PL; $parser = Module::MakefilePL::Parse->new( join("", ) ); $info = $parser->required;...
8.19 KB  
Libraries  -  sqlpp 0.06
sqlpp Perl package is a SQL preprocessor. sqlpp is a conventional cpp-alike preprocessor taught to understand SQL ( PgSQL, in particular) syntax specificities. In addition to the standard #define/#ifdef/#else/#endif cohort, provides also...
10.24 KB  
Libraries  -  App::SimpleScan::Substitution::Line 2.02
App::SimpleScan::Substitution::Line is a line with optional fixed variable values. SYNOPSIS my $line = App::SimpleScan::Substitution::Line->new(" this "); # Use only this value when substituting " ". $line->fix(substituite =>...
54.27 KB