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Bio::NEXUS::TaxaBlock 0.67

  Date Added: October 11, 2010  |  Visits: 592

Bio::NEXUS::TaxaBlock

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Bio::NEXUS::TaxaBlock is a Perl module that represents TAXA block of a NEXUS file. SYNOPSIS if ( $type =~ /taxa/i ) { $block_object = new Bio::NEXUS::TaxaBlock($type, $block, $verbose); } If a NEXUS block is a taxa block, this module parses the block and stores the taxonomic data. METHODS new Title : new Usage : block_object = new Bio::NEXUS::TaxaBlock($block_type, $commands, $verbose); Function: Creates a new Bio::NEXUS::TaxaBlock object Returns : Bio::NEXUS::TaxaBlock object Args : type (string), the commands/comments to parse (array ref), and a verbose flag (0 or 1; optional) is_taxon Title : is_taxon Usage : $block->is_taxon($query_taxonlabel); Function: Validates OTU names/taxlabels Returns : Returns taxlabel if true, undef if false Args : Query taxon label get_ntax Title : get_ntax Usage : $block->get_ntax(); Function: Returns the dimensions (that is, ntax) of the block Returns : dimensions (integer) Args : none rename_otus Title : rename_otus Usage : $block->rename_otus(%translation); Function: Renames all the OTUs to something else Returns : none Args : hash containing translation equals Name : equals Usage : $taxa->equals($another); Function: compare if two Bio::NEXUS::TaxaBlock objects are equal Returns : boolean Args : a Bio::NEXUS::TaxaBlock object.

Requirements: No special requirements
Platforms: Linux
Keyword: Args Bionexustaxablock Block Libraries Module Nexus Object Perl Module Programming Returns Taxablock Usage
Users rating: 0/10

License: Freeware Size: 153.6 KB
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