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Bio::OntologyIO::simplehierarchy 1.4

  Date Added: April 02, 2010  |  Visits: 602

Bio::OntologyIO::simplehierarchy

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Bio::OntologyIO::simplehierarchy is a base class parser for simple hierarchy-by-indentation type formats. SYNOPSIS use Bio::OntologyIO; # do not use directly -- use via Bio::OntologyIO my $parser = Bio::OntologyIO->new ( -format => "simplehierarchy", -file => "pathology_terms.csv", -indent_string => ",", -ontology_name => "eVOC", -term_factory => $fact, ); my $ontology = $parser->next_ontology(); Needs Graph.pm from CPAN. This class is nearly identical to OntologyIO::dagflat, see Bio::OntologyIO::dagflat for details..

Requirements: No special requirements
Platforms: Linux
Keyword: Base Base Class Bioontologyiosimplehierarchy Class Class Parser Libraries Ontologyio Parser Programming Simple Type
Users rating: 0/10

License: Freeware Size: 4.7 MB
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