Download Shareware and Freeware Software for Windows, Linux, Macintosh, PDA

line Home  |  About Us  |  Link To Us  |  FAQ  |  Contact

Serving Software Downloads in 976 Categories, Downloaded 29.990.280 Times

ProDy for Linux 0.9.4

Company: Ahmet Bakan
Date Added: September 23, 2013  |  Visits: 219

ProDy for Linux

Report Broken Link
Printer Friendly Version


Product Homepage
Download (18 downloads)

ProDy is a free and open-source Python package for analyzing protein structural dynamics. It allows for quantitative analysis of heterogeneous experimental structural datasets and comparison with theoretically predicted conformational dynamics.<br /><br />The input for ProDy is the atomic coordinates of the query protein in PDB file format, or simply the PDB id or the single letter amino acid sequence of the protein. Fast and flexible ProDy parsers are used to retrieve the corresponding dataset of PDB files from the PDB FTP server and extract their coordinate data and other relevant information. <br /><br />ProDy outputs the dominant patterns in structural variability extracted by principal component analysis (PCA) of the experimental datasets, and the normal modes describing the intrinsic dynamics of proteins predicted by normal mode analysis (NMA) based on elastic network models (ENMs).

Requirements: No special requirements
Platforms: *nix, Linux
Keyword: Acid Sequence Allows For Amino Acid Analys Analysis Pca Analyzing Protein Comparison Coordinate Data Extract Query Protein Retrieve Single Letter Theoretically Predicted Theoretically Predicted Conformational
Users rating: 0/10

License: Freeware Size: 727.04 KB
PRODY FOR LINUX RELATED
Security Tools  -  SDL Threat Modeling Tool 3. 1. 2008
The Microsoft SDL Threat Modeling Tool allows for early and structured analysis and proactive mitigation and tracking of potential security issues. The SDL Threat Modeling Tool helps engineers analyze the security of their systems to find and...
3.6 MB  
Utilities  -  Harmony Remote 7. 3. 2000
Why juggle separate remotes for each component or try to remember a complex sequence of buttons, when a Harmony advanced universal remote allows for complete control of up to 15 devices—including lighting—with the press of a single activity...
50.9 MB  
Communication  -  CellSort 1.0
This toolbox includes routines for using principal component analysis (PCA) and independent component analysis (ICA) to extract cellular signals from imaging data sets. A full description and validation of the method is provided in the paper,...
337.92 KB  
Education  -  GENtle for Mac OS X 1. 9. 2004
GENtle is a software for DNA and amino acid editing, database management, plasmid maps, restriction and ligation, alignments, sequencer data import, calculators, gel image display, PCR, and much more. It is free software under GPLv2+....
3.7 MB  
Education  -  GENtle for Linux 1. 9. 2004
GENtle is a software for DNA and amino acid editing, database management, plasmid maps, restriction and ligation, alignments, sequencer data import, calculators, gel image display, PCR, and much more. It is free software under GPLv2+....
1.7 MB  
Education  -  GENtle for Windows 1. 9. 2004
GENtle is a software for DNA and amino acid editing, database management, plasmid maps, restriction and ligation, alignments, sequencer data import, calculators, gel image display, PCR, and much more. It is free software under GPLv2+....
2.7 MB  
Business  -  Nucleic Acid MW widget 1.0
The Nucleic Acid MW widget allows to calculate the molecular weight of a nucleic acid sequence.
 
Business  -  Amino Acid Table Widget 1.2
The Amino Acid Table widget displays general information on amino acids conformed with the IUPAC-IUB recommendations.
 
Libraries  -  Bio::Factory::SequenceFactoryI 1.4
Bio::Factory::SequenceFactoryI is a Perl interface that allows for generic building of sequences in factories which create sequences (like SeqIO). SYNOPSIS # do not use this object directly it is an interface # get a...
4.7 MB  
Development Tools  -  Function to generate Timeseries file to use for Moore FSM coverage analysis. 1.0
This function generates a Timeseries file which can be used for Moore FSM coverage analysis.The file is generated in the working directory and can be opened into the Workspace for use by MATLAB, or read directly into Simulink using the 'Import...
10 KB  
NEW DOWNLOADS IN LINUX SOFTWARE, UTILITIES
Linux Software  -  Polling Autodialer Software 3.4
ICTBroadcast Auto Dialer software has a survey campaign for telephone surveys and polls. This auto dialer software automatically dials a list of numbers and asks them a set of questions that they can respond to, by using their telephone keypad....
488 B  
Linux Software  -  Total Video Converter Mac Free 3.5.5
Total Video Converter Mac Free developed by EffectMatrix Ltd is the official legal version of Total Video Converter which was a globally recognized brand since 2006. Total Video Converter Mac Free is a free but powerful all-in-one video...
17.7 MB  
Linux Software  -  Skeith mod_log_sql Analyzer 2.10beta2
Skeith is a php based front end for analyzing logs for Apache using mod_log_sql.
47.5 KB  
Linux Software  -  SLAX 6.0+
Slax is a modern, portable, small and fast Linux operating system with a modular approach and outstanding design. Despite its small size, Slax provides a wide collection of pre-installed software for daily use, including a well organized graphical...
190 KB  
Linux Software  -  GTK+ 2.5
GTK+, which stands for the GIMP Toolkit, is a library for creating graphical user interfaces for the X Window System. It is designed to be small, efficient, and flexible. GTK+ is written in C with a very object-oriented approach. Language bindings...
60 MB  
Utilities  -  LPAR2RRD 4.95-4
LPAR2RRD collects performance data and generates actual, historical and future trends utilization graphs of your virtual environment. It is agentless (it receives everything from the management stations like vCenter or HMC). The product supports...
2.25 MB  
Utilities  -  Nessconnect 1.0.2
Nessconnect is a GUI, CLI and API client for Nessus and Nessus compatible servers. With an improved user interface, it provides local session management, scan templates, report generation through XSLT, charts and graphs, and vulnerability trending.
819.2 KB  
Utilities  -  Dynamic Power Management 2.6.16
The Dynamic Power Management (DPM) project explores technologies to improve power conservation capabilities of platforms based on open source software. Of particular interest are techniques applicable to running systems, adjusting power parameters...
30.72 KB  
Utilities  -  Ethernet bridge tables 2.4.37.9
Ethernet bridge tables - Linux Ethernet filter for the Linux bridge. The 2.4-ebtables-brnf package contains the ebtables+bridge-nf patch. Be sure to check out the ebtables hp. This site also contains the arptables userspace tool.
40.96 KB  
Utilities  -  SaraB 1.0.0
SaraB works with DAR (Disk ARchive) to schedule and rotate backups on random-access media (i.e. hard drives, CDs, DVDs, Zip, etc. Basically anything except magnetic tapes.) This reduces hassle for the administrator by providing an automatic backup...
20.48 KB