Download Shareware and Freeware Software for Windows, Linux, Macintosh, PDA

line Home  |  About Us  |  Link To Us  |  FAQ  |  Contact

Serving Software Downloads in 976 Categories, Downloaded 30.146.627 Times

PyPedal 2.0.3

Company: John B. Cole
Date Added: September 18, 2013  |  Visits: 187

PyPedal

Report Broken Link
Printer Friendly Version


Product Homepage
Download (16 downloads)

PyPedal is a Python module that provides tools for the manipulation of pedigrees, simple visualization of pedigrees, and the calculation of measures of genetic diversity from pedigrees. <br /><br />Features:<br /><br /> * Reading pedigree files in user-defined formats<br /> * Checking pedigree integrity (duplicate IDs, parents younger than offspring, etc.)<br /> * Generating summary information such as frequency of appearance in the pedigree file<br /> * Reordering and renumbering of pedigree files<br /> * Computation of the numerator relationship matrix (A) from a pedigree file using the tabular method<br /> * Inbreeding calculations for large pedigrees<br /> * Computation of average total and average individual coefficients of inbreeding and relationship<br /> * Calculation of coefficients of partial inbreeding using an iterative tabular method (Lacy, 1996; Gulisija, 2006)<br /> * Calculation of coefficients of ancestral inbreeding using the methods of Ballou (1997) or Suwanlee et al. (2007)<br /> * Calculation of theoretical and actual effective population sizes<br /> * Computation of effective founder number using the exact algorithm of Lacy<br /> * Computation of effective founder number using the approximate algorithm of Boichard et al.<br /> * Computation of effective ancestor number using the algorithms of Boichard et al.<br /> * Selection of subpedigrees containing all ancestors of an animal<br /> * Identification of the common relatives of two animals<br /> * Calculation of the inbreeding of offspring from a prospective mating<br /> * Output to ASCII text files, including matrices, coefficients of inbreeding and relationship, and summary information<br /> * Importation and exportation of GEDCOM 5.5 files<br /> * Importation and exportation of GENES 1.20 (dBase III) files<br /> * Loading pedigrees from, and saving them to, MySQL, Postgres, and SQLite databases<br /> * Simulation of pedigrees using an algorithm derived from that in Matvec 1.1a

Requirements: No special requirements
Platforms: *nix, Linux
Keyword: Algorithm Algorithms Ancestor Ancestors Ancestral Animal Approximate Ballou Boichard Exact Founder Gulisija Methods Number Selection Sizes Subpedigrees Suwanlee Theoretical
Users rating: 0/10

License: Freeware Size: 14.77 MB
PYPEDAL RELATED
Science  -  Randomized Algorithms Control Toolbox 6
Randomized Algorithms Control Toolbox is a Matlab toolbox, provides analysis and synthesis methods for control problems with uncertainties.
303.06 KB  
Games  -  4096 Animals(2048 upgrade edition)-A fun addictive math animal numbers version game 1.0
4096 animals is a math puzzle logic game of the twelve animal patterns(pig,dog,chicken,monkey,mouse,cattle,tiger,rabbit,dragon,snake,horse,sheep).Swipe to move all animal tiles. When two animals with the same number touch, they merge into one. New...
32 MB  
Development Tools  -  Non Convex Algorithms for Group Sparse Optimization 1.0
Non Convex Optimization Algorithms for Group SparsitySolves a dummy OFDM sparse channel estimation problemReweighted Lm,p algorithm for noiseless case min||x||_m,p s.t. y = AxReweighted Lm,p algorithm for noisy case min||x||_2,p s.t. ||y -...
10 KB  
Education  -  Ancestral Build 1.0
Ancestral Build - v1 and MLS: multi-layer supertree - v0.8 written in Java 1.4. The first is a fast polynomial time algorithm to decide the ancestral compatibility of source trees with internal labels, eg displaying higher-level taxa such as...
1.75 MB  
Development Tools  -  gapolyfitn 1.0
This function implements a method of using genetic algorithms to optimise the form of a polynomial, i.e. reducing the number of terms required in comparison to a least-squares fit using all possible terms, as described in the following...
30.72 KB  
3D Action Games  -  Legacy Family Tree 5.0
Legacy Family Tree is an award winning full-featured professional genealogy program that helps you track, organize, print, and share your family history. The program is free and has no restrictions. (A Deluxe Edition is also available.) The...
17 KB  
Communication  -  Radio link coverage map 1.0
is program computes a map of visibility from a selected point on a topography. It has been written to help the search for radio relay best location. Because it considers only direct line of sight, it gives a good estimation for possible radio link...
430.08 KB  
Hard Drive Cleaners  -  Fast Duplicate File Finder 4.1.0.1
Fast Duplicate File Finder will help you find fast all duplicate files in a folder and its sub folders. The applications will compare the content of your files so it will find duplicates even if they are using different file names. It uses fast...
2.66 MB  
Utilities  -  Portable BatteryCare 0.9.8.12
BatteryCare is a software created to optimize the usage and performance of the modern laptop's battery. It monitors the battery's discharge cycles and helps increasing it's autonomy and improving its lifetime. Features * Battery's discharge...
 
Utilities  -  BatteryCare 0.9.8.12
BatteryCare is a software created to optimize the usage and performance of the modern laptop's battery. It monitors the battery's discharge cycles and helps increasing it's autonomy and improving its lifetime. Features * Battery's discharge cycles...
922 KB  
NEW DOWNLOADS IN LINUX SOFTWARE, PROGRAMMING
Linux Software  -  Polling Autodialer Software 3.4
ICTBroadcast Auto Dialer software has a survey campaign for telephone surveys and polls. This auto dialer software automatically dials a list of numbers and asks them a set of questions that they can respond to, by using their telephone keypad....
488 B  
Linux Software  -  Total Video Converter Mac Free 3.5.5
Total Video Converter Mac Free developed by EffectMatrix Ltd is the official legal version of Total Video Converter which was a globally recognized brand since 2006. Total Video Converter Mac Free is a free but powerful all-in-one video...
17.7 MB  
Linux Software  -  Skeith mod_log_sql Analyzer 2.10beta2
Skeith is a php based front end for analyzing logs for Apache using mod_log_sql.
47.5 KB  
Linux Software  -  SLAX 6.0+
Slax is a modern, portable, small and fast Linux operating system with a modular approach and outstanding design. Despite its small size, Slax provides a wide collection of pre-installed software for daily use, including a well organized graphical...
190 KB  
Linux Software  -  GTK+ 2.5
GTK+, which stands for the GIMP Toolkit, is a library for creating graphical user interfaces for the X Window System. It is designed to be small, efficient, and flexible. GTK+ is written in C with a very object-oriented approach. Language bindings...
60 MB  
Programming  -  FLEX-db Digital Asset Manager 3.0.9
FLEX-db - an enterprise Digital Asset Manager (DAM). It ingests and links metadata with files, creates thumbnails, and processes files using business rules. FLEX-db has a JSP client, Java app server for file input and output and an EJB metadata...
21.57 MB  
Programming  -  Libicom 0.9.0
The libicom library is a character based dynamicly linked library for Linux. It is used to remotely control the Icom IC-R8500 wide band receiver via an RS232 link. All call and return parameters to the control functions are character string based....
20.48 KB  
Programming  -  dotdesktop 0.3
Dotdesktop library provides ability to parse desktop entry file and access the information in a convenient way. Desktop entry file format is defined by freedesktop.org, it is used to describe information about an application such as the name and...
327.68 KB  
Programming  -  Cedalion for Linux 0.2.6
Cedalion is a programming language that allows its users to add new abstractions and define (and use) internal DSLs. Its innovation is in the fact that it uses projectional editing to allow the new abstractions to have no syntactic limitations.
471.04 KB  
Programming  -  libyasl 0.2
Libyasl is a C++ class library to easily realize TCP/UDP/Multicast clientsand servers in IPv4 and IPv6 environments under GNU/Linux systems.
143.36 KB