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FFP-Feature Frequency Profile Phylogeny 3.13

Company: gesims

Date Added: November 13, 2013 | Visits: 442

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FFP (Feature frequency profile) is an alignment free comparison tool for phylogenetic analysis and text comparison. It can be applied to nucleotide sequences, complete genomes, proteomes and even
used for text comparison. Features . Comparison of Genomes, protein and nucleic acid sequences in FASTA format . Phylip style distance matrix output . Over a dozen distance measures . Uses a fast alignment free method of comparison . Implementation of fast Rabin-Karp hashing for k-mer counting . Spaced-seed/masking hash function allows DNA/Amino Acid mismatches

Requirements: No special requirements

Platforms: *nix, Linux

Keyword: Distance, Dozen, Format, Implementation, Matrix, Measures, Method, Output, Phylip, Style

Users rating: 0/10

License: Freeware

Size: 215.04 KB

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