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OligoCounter 0.64

Company: Colin Davenport
Date Added: August 03, 2013  |  Visits: 235

OligoCounter

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OligoCounter is a Java command line program which counts overrepresented 8-14bp oligonucleotides in DNA sequences. These oligos can be useful in visualising small genomes on a global basis (see figure below), investigating repeats at certain regions, and for attributing short reads (for example from metagenomics) to a sequenced genome.<br /><br />Simple text output is produced which can be visualised with a suite of associated Java applications, for example JCircleGraph or OligoViz.

Requirements: No special requirements
Platforms: Mac, Mac OSX
Keyword: And For Applications At Certain Attributing Short Basis Be Useful Can Be Command Line Counts Overrepresented Genomesimple Te Global Basis Investigating Java Oligonucleotides Oligos Regions Short Reads Visualised Visualising Small Genomes
Users rating: 0/10

License: Freeware Size: 1.18 MB
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