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Unipro UGENE 1.10.0

Company: UniPro
Date Added: June 07, 2013  |  Visits: 186

Unipro UGENE

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UGENE is a free cross-platform genome analysis suite.<br />It works perfectly on Windows, Mac OS or Linux and requires only a few clicks to install.<br /><br />Features:<br /><br /> * Multiple sequence alignment using MUSCLE 3, KAlign, Clustal;<br /> * HMM profiles build and search, based on the source of HMMER 2 and HMMER 3;<br /> * PCR Primers design using Primer 3;<br /> * Cloning in silico capabilities;<br /> * Queries to NCBI BLAST and CDD databases;<br /> * Protein secondary structure prediction using GOR IV and PSIPRED;<br /> * Phylogenetic analysis with Phylip;<br /> * Search for restriction enzymes and integration with REBASE;<br /> * Extremely fast repeat finder;<br /> * DNA reference assembly using Bowtie;<br /> * Search for transcription factor binding sites using SITECON;<br /> * Protein back translation;<br /> * ORF finder;<br /> * Complete Smith-Waterman algorithm implementation;<br /> * Support for external tools: BLAST+, MAFFT, T-Coffee. <br /><br /><br />User interface<br /><br /> * Visual and interactive genome browsing including circular plasmid view;<br /> * Multiple alignment editor;<br /> * Chromatograms visualization;<br /> * 3D viewer for files in PDB and MMDB formats with anaglyph stereo mode support;<br /> * Phylogenetic tree viewer;<br /> * Dot plot visualization;<br /> * Query designer enables search for complex annotation patterns;<br /> * Easy to use workflow designer for custom computational workflows. <br /><br /><br />High performance computing in UGENE<br /><br /> * Complete support of modern multicore processors and SSE instructions;<br /> * Out of the box support of modern GPUs using NVIDIA CUDA and ATI Stream;<br /> * Support for cloud computing: running computational tasks on Amazon EC2 cloud;<br /> * Support for supercomputers and distributed computing. <br /><br /><br />Cooperation<br /><br /> * Can be used for education purposes in schools and universities;<br /> * Features to be included into the next release are initiated by users;<br /> * UGENE team is ready for collaboration in related projects, both free or commercial.

Requirements: No special requirements
Platforms: Mac, Mac OSX
Keyword: Anaglyph Annotation Blast Chromatograms Complex Custom Designer Enables Files Formats Interface Mafft Patterns Query Stereo Support Tcoffee Viewer Visualization Workflow
Users rating: 0/10

License: Shareware Size: 30.7 MB
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