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GenoDive 2.0 Beta 20

Company: Patrick G. Meirmans
Date Added: June 13, 2013  |  Visits: 203

GenoDive

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GenoDive is a Mac-only program for population genetics analyses. The present version is a beta, which means that it will still contain bugs, and some analyses are not yet fully implemented. Please report any issues, bugs or praise that you may have to the author. This version should work on Mac OS 10.4 (Tiger) and up on both PPC and Intel machines.<br /><br />GenoDive features many different types of statistical inferences, some of which are not available in any other population genetics software. Included inferences are among others: a flexible Analysis of Molecular Variance, estimation of standardised coefficients of population differentiation, k-means clustering of populations using a simulated annealing approach, assigning genotypic identity (clones) to individuals, testing for clonal reproduction, testing Hardy-Weinberg equilibrium, calculation of the hybrid index for individuals, and different types of Mantel tests.<br /><br />GenoDive can handle three different types of data: markerdata (e.g. from microsatellites), distance matrices (e.g. pairwise genetic distances between populations), and generic other data (e.g. the coordinates of populations), which can be combined in the statistical inferences. Importing data into GenoDive is easy: just open a file and GenoDive will automatically determine what type of data it is and will load the data into memory. GenoDive will even detect whether markerdata is in GenoDive, Fstat, Genepop, Spagedi, Genetix, BayesAss, Structure, or Migrate format.<br /><br />GenoDive has a clear, uncluttered, interface that makes it easier for you to keep an overview of your data and analyses. You can choose between viewing your data as plain text or viewing it as a matrix. The Inspector panel shows the most important information for the current data: how many individuals are included per population, the number of populations groups, which loci are included, the number of alleles per locus and a log with the analyses that have been performed on this dataset.<br /><br />GenoDive you can search your data in different ways: by allele, by individual name, by population, by clone, or by all those categories at the same time. The search can be very specific: you can for example search all population names that begin with the string "NL" or all alleles that are longer than 150 bp.

Requirements: No special requirements
Platforms: Mac, Mac OSX
Keyword: Bayesass Clear Detect Determine Distance Formatgenodive Fstat Genepop Genetix Interface Makes Matrices Memory Microsatellites Migrate Pairwise Spagedi Structure Uncluttered
Users rating: 0/10

License: Freeware Size: 8.25 MB
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