Download Shareware and Freeware Software for Windows, Linux, Macintosh, PDA

line Home  |  About Us  |  Link To Us  |  FAQ  |  Contact

Serving Software Downloads in 976 Categories, Downloaded 29.877.032 Times

MatGAT f 2.02

Company: MatGAT Team
Date Added: August 06, 2013  |  Visits: 349

MatGAT f

Report Broken Link
Printer Friendly Version


Product Homepage
Download (61 downloads)



MatGAT (Matrix Global Alignment Tool) is a simple, easy to use similarity/identity matrix generator. It calculates the similarity and identity between every pair of DNA or protein sequences in a given data set without needing pre-alignment of the data. The program performs a series of pair-wise alignments, calculates similarity and identity, and then places the results in a distance matrix.<br /><br />Data may be input into MatGAT as a cut and paste function or using a browse function for larger files. Files must be plain text in the standard FASTA format with multiple sequence analysis if each has a FASTA title line starting with ">". Files of up to 100 DNA or protein sequences have been analyzed successfully using MatGAT. The user may specify which type of alignment matrix (BLOSUM, PAM, etc.) he may want to employ with his DNA or protein sequences.<br /><br />MatGAT 2.0 now is able to directly transfer results over to MS Excel and create a spreadsheet with a single button click, it is also able to export all the individual alignments into a text file.

Requirements: No special requirements
Platforms: Mac, Mac OSX
Keyword: Alignments Analyzed Calculates Fasta Files Function Identity Matgat Matrix Protein Quotgtquot Results Sequences Similarity Starting Successfully Title
Users rating: 0/10

License: Shareware Size: 256 KB
USER REVIEWS
More Reviews or Write Review


MATGAT F RELATED
Development Tools  -  Incomplete beta function 1.0
Calculates incomplete beta function in the complex plane Uses continued fractions for abs(z)=5Run without arguments for a test
10 KB  
Libraries  -  File::Next::OO 0.04
File::Next::OO is a Perl module with file-finding iterator Wrapper for File::Next::files function. SYNOPSIS File::Next::OO is just a wrapper around File::Next::files function. But it is easy to remember and less typing. Call it always with...
8.19 KB  
Multimedia & Graphics  -  ISHAN New
ISHAN is a small, easy to use, Java based application specially designed to help you analyze fasta files. Input can be given by pasting it into the given window or selecting an input file. If both methods are used, then the inputs will be...
 
Multimedia & Graphics  -  Sirocco AFastAMaker 1.0
Sirocco AFastAMaker is a simple and handy tool built using Java that allows you to create Fasta files. The Fasta files built using this software can then be used with other tools. Now you can create the Fasta files you need in no time at all.
 
Multimedia & Graphics  -  ChromatoGate 1.2
ChromatoGate is a lightweight application that was designed in order to help you easily generate consensus sequences and preliminary fasta files to be used for alignment. ChromatoGate can also be useful for detecting ambiguous characters in an...
 
Development Tools  -  unfoldprotein.m 1.0
UNFOLDPROTEIN(data, bracket) calculates the melting temperature, Tm, of a protein from a given Nx2 array of unfolding data (with N >= 10). In the case of unfolding studies performed using circular dichroism spectroscopy, the second Tm calculated...
10 KB  
Network & Internet  -  paptcha 0.0.1
paptcha is a PHP function that produces random numbers and results for a CAPTCHA program. paptcha project takes 3 arguments: the number of digits to produce, the number of choices to produce, and a flag to indicate whether the results should be...
 
Development Tools  -  Function To Generate Truth Table Condition Vectors 1.0
This function returns a matrix of all possible binary condition vectors for a logical system with (I) inputs.The number of inputs is limited only by the user's available system memory. The function is highly efficient, written using only three...
10 KB  
Development Tools  -  symfact.m 1.0
A function for performing matrix symmetrical factoring.A=B*C where B^T=B and C^T=C
10 KB  
Word Processing  -  GlobalFind 1.0
GlobalFind can search through text files for specified text and display the results in a list, your search queries are saved in case you need to perform the same search again. There is also a search & replace text option which can replace across...
490 KB  
NEW DOWNLOADS IN MACINTOSH SOFTWARE, EDUCATION
Macintosh Software  -  Cisdem Data Recovery for Mac 4.1.0
Using advanced scanning technology and directory restructuring algorithm, Cisdem Data Recovery for Mac can help you to recover lost valuable data, documents, emails, videos, music, photos, and lost partitions from any Mac...
6.6 MB  
Macintosh Software  -  iDoctor 2.0
iDoctor equips Mac users with 15 cleaning and optimization tools to make their working on Mac easy and simply. With iDoctor’s help you can also manage, encrypt, backup, recover or shred files with just a couple of mouse clicks. Thus,...
98 KB  
Macintosh Software  -  AnyMP4 Free iPhone Data Recovery for Mac 7.3.18
AnyMP4 Free iPhone Data Recovery for Mac can allow you to recover deleted files from iPhone/iPad/iPod like Camera Roll, Notes, Reminders, Voice Memos, and Safari Bookmark on Mac. You can directly recover deleted data from iOS Device like...
24.4 MB  
Macintosh Software  -  AnyMP4 DVD Ripper for Mac 6.3.16
AnyMP4 DVD Ripper for Mac not only help you rip DVD movies to any video formats like MP4, MOV, M4V, AVI, WMV, FLV, MKV, MPEG and more for Mac, but also rip DVD to other audio formats such as MP3, FLAC, WAV, WMA, AAC, ALAC, AC3 and more for Mac....
43.8 MB  
Macintosh Software  -  AnyMP4 Blu-ray Ripper for Mac 6.1.86
AnyMP4 Blu-ray Ripper for Mac aims to help you handily rip Blu-ray movie to any popular video or audio format for your portable device and even 3D player device. It can work as Blu-ray copy software to back up your Blu-ray disc/file to Mac. It...
44.6 MB  
Education  -  Peppa Popper 1.0
Peppa Popper I was inspired by a children???*a*?s TV show Peppa Pig visits Daddy Pig???*a*?s Office and the fact that my daughter (aged 16 months) has been taking marginally more interest in the computer. So I did a quick...
807 B  
Education  -  Sliding Down an Incline Plane Model 1.0
This interactive simulation shows a stone block lying at rest on an inclined plane. Initially, the component of gravity along the plane surface is exceeded by the force of static friction. The slope of the ramp can be increased or decreased,...
51.2 KB  
Education  -  MrAIC 1.4.4
MrAIC.pl is a Perl script for calculating AIC, AICc, BIC, and Akaike weights (for a review, see Burnham and Anderson, 2002) for nucleotide substitution models. Likelihood scores under different models are estimated using PHYML (Guindon and...
10.24 KB  
Education  -  HapEvolution 1.0
Complex diseases involve multiple genes with low penetration which may be distributed over the genome. Most of the current haplotype association methods are typically restricted in length and consist of alleles from contiguous SNPs. These...
1.61 MB  
Education  -  Three Charges 1.0
In this simulation, you can investigate the idea of the force between charged objects. Initially, the simulation sets up three charged objects, one at each corner of an equilateral triangle. The charges have different magnitudes - your job is to...
1.36 MB