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MrAIC 1.4.4

Company: Johan A. A. Nylander
Date Added: December 02, 2013  |  Visits: 451

MrAIC

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MrAIC.pl is a Perl script for calculating AIC, AICc, BIC, and Akaike weights (for a review, see Burnham and Anderson, 2002) for nucleotide substitution models. Likelihood scores under different models are estimated using PHYML (Guindon and Gascuel, 2003).<br />Input is DNA data in PHYML format (see below).<br />If the argument -modeltest is parsed, 56 models (the ones tested in Modeltest [Posada and Crandall, 1998]) are evaluated in PHYML. Default is to test the 24 models that can be specified in MrBayes v3 (Ronquist and Huelsenbeck, 2003). These are JC, F81, K2P (aka K80), HKY, SYM and GTR, each combined with Propinv (I) and/or Gamma (G).<br />A difference between Modeltest and MrAIC.pl is that MrAIC.pl does not evaluate all models on the same, approximate topology. Instead, PHYML is used to try to find the maximum of the likelihood function under all models. This is necessary for finding AIC, AICc, or BIC for the models.

Requirements: No special requirements
Platforms: Mac, Mac OSX
Keyword: Approximate Combined Default Evaluate Evaluated Finding Function Huelsenbeck Models Modeltest Mraicpl Mrbayes Phyml Propinv Ronquist Topology
Users rating: 0/10

License: Freeware Size: 10.24 KB
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