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SEQLIB 1.6

Company: Seqlib Team
Date Added: July 07, 2013  |  Visits: 204

SEQLIB

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Seqlib is a Python module and application package for population genetics (and more). It allows processing, analyzing and simulating biological sequences. It is specifically designed for automated large-scale sequence analysis.<br /><br />Main features:<br /><br /> * Fasta-centered input and output, format conversion utilities.<br /> * Molecular population genetics statistics (neutrality tests, population divergence).<br /> * Integrated coalescent simulator implementing partial selfing, custom population structure and history, microsatellite models and others.<br /> * Interface to the commonly used sequence simulator ms.<br /> * Interface to external applications allowing similarity search (BLAST), molecular phylogeny, primer design and others.<br /> * Approximate Bayesian Computation based fit of demographic models.<br /> * C++ core library improving performance.<br /> * Python front-end designed for use in simple Python programs or scripts.<br /> * Applications available for direct execution from the terminal.<br /> * Documentation for users and developers.<br /><br />Seqlib is released under the GNU General Public License (GPL) version 3 (compatible with any later version). The license and the high-level, object-oriented design of the seqlib interface allows anyone to modify it to match specific needs.

Requirements: No special requirements
Platforms: Mac, Mac OSX
Keyword: Allowing Similarity Allows Anyone Analysismain Features And And Others And The Commonly Gnu Match Specific Output Processing Sequence Simulator Simulating Users Developersseqlib Utilities Molecular Population Version License With Any Later
Users rating: 0/10

License: Freeware Size: 2.7 MB
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