bio library 0.4

bio library is a collection of algorithms and data structures that are useful when building various bioinformatics-related utilities and tools.<br /><br />Here are some key features of "bio library":<br /><br />?*A* Sequence data type supporting protein and nucleotide sequences and conversion between them, quality data, reading and writing Fasta formatted files, reading TwoBit and phd formats.<br />?*A* Rudimentary support for doing alignments, including dynamic adjustment of scores based on sequence quality and Blast output parsing.<br />?*A* Partly implemented single linkage clustering, and multiple alignment.

Requirements:	No special requirements
Platforms:	Mac, Mac OSX
Keyword:	Adjustment,  Alignment,  Alignments,  Based,  Clustering,  Dynamic,  Formats,  Implemented,  Including,  Linkage,  Multiple,  Partly,  Quality,  Reading,  Rudimentary,  Scores,  Single,  Support,  Twobit
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