Download Shareware and Freeware Software for Windows, Linux, Macintosh, PDA

line Home  |  About Us  |  Link To Us  |  FAQ  |  Contact

Serving Software Downloads in 976 Categories, Downloaded 29.889.912 Times

Automated Counting of Bacterial Colonies 1.0

  Date Added: July 03, 2013  |  Visits: 214

Automated Counting of Bacterial Colonies

Report Broken Link
Printer Friendly Version


Product Homepage
Download (18 downloads)



A function to automate bacterial colony counting in images of plated agar in a Petri dish.Provides colony_count.m to automate counting of bacterial colonies.The approach is as follows:1. Use Hough transform to locate Petri dish.2. Threshold with Otsu's method.3. Count colonies as regional maxima in the original image which are present in the segmentation.David Young's circular Hough transform functions are required. They are available here:http://www.mathworks.com/matlabcentral/fileexchange/26978-hough-transform-for-circlesCurrently, a range of Petri dish radii is required as a parameter.This program was originally developed for a Stack Overflow question found here: http://stackoverflow.com/questions/9954891/counting-colonies-on-a-petri-dish.Future plans are to increase versatility by automating parameter selection and reducing sensitivity to experimental and imaging conditions (lighting, bright/dark field, media color). Features suggested in comments will be considered for addition.

Requirements: No special requirements
Platforms: Matlab
Keyword: Automating Found Future Increase Overflow Plans Question Radii Stack Versatility
Users rating: 0/10

License: Shareware Size: 174.08 KB
USER REVIEWS
More Reviews or Write Review


AUTOMATED COUNTING OF BACTERIAL COLONIES RELATED
Project Management  -  Chartgantt Basic Demo 2.2
We have invested 3 years into developing our Excel Gantt Chart templates incorporating the requirements of hundreds of customers. Whilst our solutions look simple and are easy to use, they are the most powerful, professional Gantt Chart templates...
466 KB  
Delphi Utilities  -  Ultimate Pack 2011.09
What is Ultimate Pack? Ultimate Pack is a software pack which contains all Greatis Software's products for Delphi and C++ Builder. Runtime Fusion (with Form Designer and Object Inspector within), Print Suite Pro, Commented Image, Image Editor,...
11.16 MB  
Networking  -  CommentLuv for WordPress 2.90.9.1
This plugin will visit the site of the comment author while they type their comment and retrieve a selection of their last blog posts, tweets or digg submissions which they can choose one from to include at the bottom of their comment when they...
757.76 KB  
Medical  -  EMT Academy 7.2
EMT Academy is a complete training guide for EMT-Basic level EMS personnel. Pass your initial certification exam with flying colors, or keep your skills sharp long after you become certified. Written in the style of the NREMT-B...
3.7 MB  
Reference  -  HTTP Codes 1.3
Whether you're debugging web application issues, or performing forensics on web logs, this iPhone/iPod application provides a handy reference to all Hypertext Transfer Protocol Status codes. It contains descriptions to all Client and Server status...
102.4 KB  
Libraries  -  Str R107
Str is a C++ class that is designed to make strings almost as easy to work with as they are in languages like TCL or Python. The Str class has minimal outside dependencies, is implemented as a single source file, and is designed to be...
256 KB  
Database Tools  -  Legarion 0.9.7
Legarion is a fork of the GPL version of the popular rpg role playing game legend of the green dragon.Our future plans include the addition of extra continents, team battles and other features not found in the original game.
307.2 KB  
Business  -  Balance Forecasting 1. 2. 2001
Have you found yourself often asking the questions "What will my bank balance look like in 3 months if I increase my credit card payment by X dollars? Can I afford to buy a new set of headphones in 3 months?" I was always having issues with those...
716.8 KB  
Multimedia  -  Fast STL import function 1.0
This version is currently ASCII only but future revisions will support binary. This function is based off of Luigi Giaccari's STL importer but uses the textscan function to dramatically increase speed, which makes a significant difference for...
10 KB  
Modules  -  Closed Question 6.x-1.3
The Drupal module ClosedQuestion adds the Closed Question node-type to Drupal that takes an XML question definition and displays this question to users. The ClosedQuestion-nodes are stand-alone and can be used anywhere a normal node is...
71.68 KB  
NEW DOWNLOADS IN SCRIPTS, DEVELOPMENT TOOLS
Scripts  -  Freelancer Script 5.05
Main Features: 100% Secured. Email Support (3 Years). FREE Updates (3 Years). Post projects. Featured projects. Private projects. Sealed projects. Edit/delete projects. Select freelancers....
5.49 MB  
Scripts  -  B2B Script 4.20
Main Features: 100% Secured. Email Support (3 Years). FREE Updates (3 Years). Sign-up Account (Registration of account). Lead generation tools (for the sellers). Email verification to...
5.49 MB  
Scripts  -  B2C Script 5.06
Main Features: 100% Secured. Email Support (3 Years). FREE Updates (3 Years). The script comes with totally editable site colors, icons and graphics Multilevel categories allows extensive browsing Admin can change Category ordering or...
5.49 MB  
Scripts  -  Social Networking Script 2.86
Main Features: 100% Secured. Email Support (3 Years). FREE Updates (3 Years). Registration with name, email, password, date of birth etc. User can add multiple school, college, university with start...
5.49 MB  
Scripts  -  Business Networking Script 8.04
Main Features: 100% Secured. Email Support (3 Years). FREE Updates (3 Years). Ajax based interface. Profile creation. Different types of profile. Profile for jobseekers, employers and employed...
5.49 MB  
Development Tools  -  VMP Viewer 1.0
This is a very rudimentary tool to visualize the VMP files generated by BrainVoyager. Useful to share files with people who do not have BV.
10 KB  
Development Tools  -  Sending reports and timestamped file by emailing 1.0
main executing reference usage:[1] usage_send_mail.mIllustrates email sending with multiple separate files or single timestamped tar file. Attachment failure is properly handled, with continuation of report emailing without the attachment.[2]...
768 KB  
Development Tools  -  IrisMVC 2.0 rc1
IrisMVC is an OOP PHP framework that developers can use as a strong and secure foundation to build on various web applications following the Model-View-Controller (MVC) pattern. It provides the basic functionality developers need, without...
51.2 KB  
Development Tools  -  7-Zip for Script 4.42
7-Zip is a file archiver with a high compression ratio.Features:- High compression ratio in new 7z format with LZMA compression- Supported formats:- Packing / unpacking: 7z, ZIP, GZIP, BZIP2 and TAR- Unpacking only: RAR, CAB, ISO, ARJ, LZH, CHM,...
624.64 KB  
Development Tools  -  Barnardextest 1.0
This file, as the Fisher's exact test, performs the exact probability test for a table of frequency data cross-classified according to two categorical variables, each of which has two levels or subcategories (2x2). It is a non-parametric...
10 KB