Similarity index for genetic band profiles 1.0

Date Added: April 01, 2013 | Visits: 397

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This script executes some basic calculations from the following article.Leonard AC, Franson SE, Hertzberg VS, Smith MK & Toth GP (1999) Hypothesis testing with the similarity index. Molecular Ecology 8: 2105-2114.Please consult this article for any conceptual or mathematical details.The script calculates the mean similarity index (S) and its variance for a given set of individual genetic band profiles.The input is a single matrix (*.txt) of which each row is a sample (genetic profile) and each column is a bin (genetic marker).For example, the following data...Markers: a b c d e fIndividual 1: 0 0 0 1 1 1Individual 2: 0 0 1 0 1 0Individual 3: 0 0 . . 0 0Individual 4: 1 0 0 1 0 1is entered as...0 0 0 1 1 10 0 1 0 1 00 0 NaN NaN 0 01 0 0 1 0 1and yields a mean S of 0.1778 and variance of 0.0316, when the script is run.

Requirements: No special requirements

Platforms: Matlab

Keyword: Genetic, Individual, Input, Matrix, Profiles, Sample, Single, Variance

Users rating: 0/10

License: Shareware

Size: 10 KB

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